| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5948 |
|---|
| Symbol | |
|---|
| ID | 5751569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6629931 |
|---|
| End bp | 6631259 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641301080 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001566961 |
|---|
| Protein GI | 160901379 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.5975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGG CAACCGATCC CAGGGTCATC CGCAAGGTAG TGACCTCCGC GCTCATCGGC
GCAACCATCG AGTGGTATGA CTTCTTCCTG TACGGCGTGG TCGCCGGCAT CGTGTTCAGC
AAGCTGTACT TTCCCAGCGA CGATCCGCTG ATCTCCACCC TGCTGGCCTA CACCACCTTT
GCCGTGGGCT TCGTCACGCG GCCGCTGGGC GGGGTGATCT TCGGGCACTT CGGCGACCGC
GTGGGACGCA AGAGCATCCT GGTGGTCACG CTGATGATCA TGGGCGTGTC CACCTTCCTG
ATCGGCCTGC TGCCCACGCA TGCCCAGATC GGCGTGGCCG CGCCCATCCT GCTGCTGCTG
TTGCGCGTGG CCCAGGGCAT AGGCCTGGGC GGCGAATGGG GCGGCGCCGT GCTCATGGCC
TACGAATACG CGCCCAAGGA AAAGCGGGGC TTCTATGCCT CCCTGCCCCA GGTGGGCCTG
GCCATCGGCC TGTTCATGGC CTCGGGCGTG GTGGCCCTGC TGTCATGGCT GTGCACCGAG
GAGCAATTCA TGGCCTGGGG CTGGCGCGTC GCGTTCCTGA TCTCGGGCCT GATGGTGGCC
GTGGGCATGT ACATCCGCCT GCATGTGAAG GAGACGCCCG AATTCGCGGC CGTCAAGGCA
CGCAATGCCG AGACCGCGAT TCCCTTCATG GACATGATGC GGCGCTATCC GGGCAATGTG
CTCAAGGGCA TGGGCGCACG CTATATCGAC GGCGTTTTCT TCAACGTCTT CGGCGTGTTC
TCGATCAGCT ACCTGACCTC CACCCTGCAG ATCAGCCGCA CCGATGCATT GATCGGCGTG
ATGGTCGCCG CCGTGGTGAT GTGCTTCACG ATTCCACTGT TCGGCCGCCT GTCCGACCAC
CTGGGCCGCA GCCGCGTGTA TTTGTGGGGA TCGCTGATCA CCGCGGTCTC GGCCTTCCCG
GCCTTCTGGC TCATGGCCGA CAGCGGCGGC AATATGCTGC TGATATGGAT CGCCATCGTC
GTGCCCTTCG GCATTCTCTA CGCGGCGGTC TACGGTCCCG AAGCCGCCCT CTTCTGCGAC
CTGTTCGACG CCAAGGTGCG CTACACCGGC ATTTCCTTCG TCTACCAGTT CTCGGGCATT
TTCGCGTCCG GCATCACGCC CATCATTGCG ACGGCGCTGG TCAAGACGGC CGGTGGCAGC
CCATGGCTGG TGTGCCTGTA TGTGGTGTTT GCGGGAGCGG TATCGGCCTG GTGTGCCTGG
GCGATTGGGA GGGATGGACA GGGTGCCCGC GCCTTTCGGC CCTTGGGCAA TTCCAGGGCA
GGCCTGTGA
|
|---|
| Protein sequence | MTTATDPRVI RKVVTSALIG ATIEWYDFFL YGVVAGIVFS KLYFPSDDPL ISTLLAYTTF
AVGFVTRPLG GVIFGHFGDR VGRKSILVVT LMIMGVSTFL IGLLPTHAQI GVAAPILLLL
LRVAQGIGLG GEWGGAVLMA YEYAPKEKRG FYASLPQVGL AIGLFMASGV VALLSWLCTE
EQFMAWGWRV AFLISGLMVA VGMYIRLHVK ETPEFAAVKA RNAETAIPFM DMMRRYPGNV
LKGMGARYID GVFFNVFGVF SISYLTSTLQ ISRTDALIGV MVAAVVMCFT IPLFGRLSDH
LGRSRVYLWG SLITAVSAFP AFWLMADSGG NMLLIWIAIV VPFGILYAAV YGPEAALFCD
LFDAKVRYTG ISFVYQFSGI FASGITPIIA TALVKTAGGS PWLVCLYVVF AGAVSAWCAW
AIGRDGQGAR AFRPLGNSRA GL
|
|---|
| |