| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5857 |
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| Symbol | |
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| ID | 5751478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 6511923 |
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| End bp | 6515072 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641300989 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001566870 |
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| Protein GI | 160901288 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGT TCTTCATCAG CCGCCCCAAC TTCGCCTGGG TGGTGGCCAT CTTCATCATG
CTCGCCGGGC TGCTGGCCAT ACCGGCGCTG CCCGTCTCCC AGTTTCCCAA CGTGGCGCCG
CCGCAGATCT CGATCACCGC CAACTACCCG GGCGCCTCCG CCACCACGGT GATGGAGTCG
GTGACCAGCG TCATCGAGGA GGAGCTCAAC GGCACCAAGG GGCTGCTGTA CTTCGACTCC
TCCAGCGGCT CCACGGGCCT GGCCGAGATC ACGGCCACCT TCGCCCCGGG CACCGAGCCC
GCGCTGGCCC AGGTGGAGGT GCAAAACCGC ATCAAGAAGG CCGAGGCGCG CCTGCCCGCG
TCCGTGATGC AGATGGGCCT GCAGGTCGAG CAGGCCAGCG CCAACTTCCT GATGATCTAC
TCGCTGACCT ACAAGGACGG CAGCGGCGGC AACAGCGAGG TGGCCCTGTC CGACTACGCC
GTGCGCAACA TCAACAACGA GATCCGCCGC GTGCCCGGCG TGGGCAAGGT GCAGTTCTTC
GCTGCCGATG TGGCCATGCG CGTGTGGGTC GATCCGAACA AGCTGCTGGG CTACGGCCTG
TCGATGGCGG ACGTGAACGC GGCCATCGCC GCCCAGAACG CGCAGGTGCC GGCCGGCAGC
TTTGGCGCCT CGCCCGCAGG GCCCGGCCAG GAGCTGAGCG CCACCATTGC CGTCAAGGGC
ACGCTGGCCT CGCCCGAGGA GTTCGGCCAG ATCGTGCTGC GTGCCAGGGC CGATGGCTCG
GCCGTGCGCC TGGCCGATGT GGCGCGGCTG GAGGTCGGCC AGCTGGACTA CAGCTTTTCC
TCGCGCGAGG ACGGCCGCCA GGGCGTGGCC GCCGCCGTGC AGCTGGCGCC CGGCGCCAAC
GCCATGCAGA CCGCCAAGGC CGTCAAGGCG CGCCTGGCCG AGCTGTCGCA GAACTTCCCC
GCCGGCATCC AGTACGCCGT GCCCTATGAC ACCTCGCGCT TCGTGGAAGT GGCCATCGGC
AAGGTCATCC AGACCCTGGT GGAGGCCGTG GCGCTGGTGT TCCTGGTGAT GTGGCTGTTC
CTGCAGAACC TGCGCTACAC GCTGATTCCC ACCATCGTCG TGCCCGTGTG CCTGGCCGGC
ACCCTGGGCG TGATGTATGC GCTGGGCTTT TCGGTGAACA TGATGACCAT GTTCGGCATG
GTGCTGGCCA TCGGCATCCT GGTGGACGAC GCCATCGTGG TGGTGGAGAA CGTGGAGCGC
CTCATGGCCG AGGAGGGGCT GTCGCCGCTG GCCGCCACGG TCAAGGCCAT GCAGCAGGTC
TCGGGCGCCA TCGTCGGCAT CACCCTGGTG CTGGTGGCCG TGTTCCTGCC GCTGGCCTTC
ATGAGCGGCT CGGTGGGCGT GATCTACCGG CAGTTCTCGC TGTCGCTGGC CGTGTCCATC
CTGTTCTCGG GGCTGCTGGC TCTGACCTTC ACGCCGGCGC TGTGCGCCAC GCTGCTCAAG
CCCATTGCCA AGGGCCACCA CGCCGAGCGC AAGGGCTTCT TCGGCTGGTT CAACCGCCGC
TTCGCGGCGC TGACCGAGCG CTTCGACCTG CTCAACCAGC GGCTGGTGCG CCGCGCCGGG
CGCTGCATGC TGGTGTATGC CGCCATCGTG GCCGGGCTGG GCGTGGCGTA CACGCGCATG
CCCGAATCCT TCGTGCCCTA CGAGGACATG GGCTACTACA TCGTCGGCGT GCAGCTGCCG
CCGGGCGCCA CCACGGAGCG CACCAAGGCC ATGGTCAAGG ACATGGAGGA CTACATCCAG
GGCCGCCCCG CCACGGCCCA GGCCGAGTTC CTGATGGGCT ACAGCTTCTC GGGCATGGGG
CAGAACGCGG CCCTGGCCTT CGTCACGCTC AAGGACTGGT CGGTGCGCGG CGCCGGGCAG
GCGTCGTGGG ACGAGGTGCA GGCCTTCAAC CAGCGCTTTG CCAGCCTGTC CGACGGCACT
GTCATGGCCG TGGACCCGCC GCCCATCGAC GGCCTGGGCA ACTCCGGCGG CTTTGCGCTG
CGCCTGCAGG ACCGCGCCAA CCTGGGCCGC GAAGCGCTGA TCGCCGCGCG CGACCAGCTG
CTGGCCAAGG CCAATGCCTC GCCCATCATT GCCTACGCCA TGATGGAAAA CCTGGAGGAT
GCGCCCCAGC TGCGGCTGGA CATCGACCGG CGCAAGGCGC AGGCCCAGGG CGTGGATTTC
AGCGCCATCA ACACGGCCCT GTCCACCGCC TACGGCTCGG CCGTGATCAA CGAGTTCCCC
AACGCGGGCC GCCTGCAGCG CGTGGTGGTG CAGGCCGATG CCCAGGCCCG CGCGCGGCCC
GAGGACATCC TGCGCCTGCA CGTGCCCAAC GCCGGCGGGC AGCAGGTGCC GCTGTCGGCC
TTTGCCACGG TGCGCTGGGA AAGCGGGCCG GTGCAGATCT CGCGCTACAA CGGCTATCCG
GCCTTCCGCA TCTCGGGCGA CGCCAGGCCC GGCCACACCA CGGGCGAGGC CATGGCCGAG
CTGGAACGCA TCATGGCCGA GATGCCGCGC GGCATAGGCT ACGAGTGGAC GGCCCTGTCC
TTCCAGGAGA AAGCTGCCGG TGCCCAGGCG CCCAAGCTGT TCGCGCTGGC CATCGTGGTG
GTGTTCCTCC TGCTGGTGGC CCTGTACGAG AGCTGGAGCA TTCCCGCCGC CGTGATGCTG
ATCGTGCCCA TAGGCGCGCT GGGATCGGTG CTTGCCACCT CGGCCGTGGG CCTGTCCAAC
GACGTGTACT TCAAGGTGGG CCTGATCACC ATCATCGGCC TGGCGGCCAA GAACGCCATC
CTGATCGTGG AGTTCGCCAG GGACCTGCAT GCGCAGGGGC ACAGCCTGGC GCAGGCCGCG
CTGCAGGCGG CGCGGCTGCG CTTTCGGCCC ATCGTCATGA CCTCGCTGGC CTTCATCCTG
GGCGTGGTGC CGCTGGCGCT GGCCTCGGGT GCGGGCGCCT CCAGCCAGGC CGCCATCGGC
TTCGGCGTGA TCGGCGGCAT GCTGTCGGCC ACGCTGCTGG GGGTGGTCTT CGTTCCCGTC
TTCTTCGTCT GGGTGCTGTC CCTGTTCCGG CGCAAGGCGC CGGCCGGCAC CCCGCCTGCC
CTGCAGGCCC CGGCAACCTC CATCGAGTAA
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| Protein sequence | MSKFFISRPN FAWVVAIFIM LAGLLAIPAL PVSQFPNVAP PQISITANYP GASATTVMES
VTSVIEEELN GTKGLLYFDS SSGSTGLAEI TATFAPGTEP ALAQVEVQNR IKKAEARLPA
SVMQMGLQVE QASANFLMIY SLTYKDGSGG NSEVALSDYA VRNINNEIRR VPGVGKVQFF
AADVAMRVWV DPNKLLGYGL SMADVNAAIA AQNAQVPAGS FGASPAGPGQ ELSATIAVKG
TLASPEEFGQ IVLRARADGS AVRLADVARL EVGQLDYSFS SREDGRQGVA AAVQLAPGAN
AMQTAKAVKA RLAELSQNFP AGIQYAVPYD TSRFVEVAIG KVIQTLVEAV ALVFLVMWLF
LQNLRYTLIP TIVVPVCLAG TLGVMYALGF SVNMMTMFGM VLAIGILVDD AIVVVENVER
LMAEEGLSPL AATVKAMQQV SGAIVGITLV LVAVFLPLAF MSGSVGVIYR QFSLSLAVSI
LFSGLLALTF TPALCATLLK PIAKGHHAER KGFFGWFNRR FAALTERFDL LNQRLVRRAG
RCMLVYAAIV AGLGVAYTRM PESFVPYEDM GYYIVGVQLP PGATTERTKA MVKDMEDYIQ
GRPATAQAEF LMGYSFSGMG QNAALAFVTL KDWSVRGAGQ ASWDEVQAFN QRFASLSDGT
VMAVDPPPID GLGNSGGFAL RLQDRANLGR EALIAARDQL LAKANASPII AYAMMENLED
APQLRLDIDR RKAQAQGVDF SAINTALSTA YGSAVINEFP NAGRLQRVVV QADAQARARP
EDILRLHVPN AGGQQVPLSA FATVRWESGP VQISRYNGYP AFRISGDARP GHTTGEAMAE
LERIMAEMPR GIGYEWTALS FQEKAAGAQA PKLFALAIVV VFLLLVALYE SWSIPAAVML
IVPIGALGSV LATSAVGLSN DVYFKVGLIT IIGLAAKNAI LIVEFARDLH AQGHSLAQAA
LQAARLRFRP IVMTSLAFIL GVVPLALASG AGASSQAAIG FGVIGGMLSA TLLGVVFVPV
FFVWVLSLFR RKAPAGTPPA LQAPATSIE
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