Gene Daci_5852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5852 
Symbol 
ID5751473 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6505703 
End bp6507559 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content68% 
IMG OID641300984 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001566865 
Protein GI160901283 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.217953 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAATTTA ACAATTCACC CTTAGGGCTT TATCAAATAA ATCATTTATT TTTGATAGAA 
ACTGATACTT GCACCACCTA CCTGGAAAGC GCCATGAATC TCCGCACCTG GACCGTCAAG
ACCAAGCTCT ACGCCGCCTT TACCGCCCTG GCTTTACTGG TCGCACTGGT TTCCGTATCT
GCCCTTCATG CGCTGGACGG TTCCGACCGC AACCTGACCC AGTTCGTCGA CGGCGTGAAC
GCCCGCGCCC ATCTGGCCGA ACAGGTGCGC GCGGCCGTGG ACAGCCGCGC CATCGCGGCG
CGCAACCTGG TGCTGGTGAA CACGCCAGCC GATCTGGACA TGGAAAAAAC GGCCGTGTAC
GCCGCCCATG CCGCGGTCAA GTCCCACCTG GACCAGCTCA AGGCCCTGGT GGCCGCGCCC
GGGGTAGGCG AGGAGGCTCG CGCCCTGGTC GCCCGCATCG ACCAGATAGA GCAGCGCTAC
GGCCCTGTGG CGCTGGACAT CGTTTCGCTG GCGCTGCGCC AGCAAAGGGA CGAGGCCATT
GCCAAGATGA ACAGCGAGTG CCGGCCGCTG CTGGCCCAGC TGATCGCGGC CACCGACGAG
TACAGCCAGC TCACGCGCCA GCACGCCCAG GTCATGGTGG AGCAGGCCAC GCAGTCCTAT
GTGCAGCAAC GCAACATGCA GATCGGCGTG AGCGCGGTCG CCTTCGTGCT GGCCCTGCTC
ATGGGCCGGC TGATCGCACG CGGCCTGACA CGCGCGCTGG GGGCCGAGCC TGCCCAGCTC
GGTGAAGTCG CCCGCCAGAT CGCCGACGGC AACCTCGACC CCGGACTGGT GCGCAGCGAA
GCGCCCGCCG GCAGCGTGCA GGCCTCGCTC AACGCCATGC ACCAGAGCCT GGCCAGCGTG
GTCAGCGATG TGCGCAACAA CGCCGACAGC GTGGCCGTGG CCAGCGAGCA GATCGCCAAG
GGCAATGCCG ACCTGAGCCG CCGCACCGAG CAGCAGGCCA GCGCGCTGCA GGAAACCGCA
GCCTCCATGG ACGAGCTGTC TTCCACCGTG CAGCAGAACG CGGACAACGC GCGCCAGGTC
AACCAGCTCG CGCGCGGCGC CAGCCAGATC GCGGCCAAGG GCGGCACCGT GGTGCAGGAA
GTAGTGGGCG CCATGCAGGA CATCCATGCC AGCTCGCGCC AGATCGGCGA CATCGTGGGC
GTGATCGACT CCATCGCCTT CCAGACCAAC ATCCTGGCCC TGAACGCCGC CGTCGAGGCC
GCACGCGCCG GCGAGCAGGG CAAGGGCTTT GCCGTGGTGG CCGCCGAAGT GCGCACCCTG
GCCCAGCGCA GCGCGCAGGC CGCCCGCGAG ATCAAGCAGC TCATCACTGA CAGCGCCACG
CGCGTCAGCC AGGGCGCGGA GCTGGCCGAC CAGGCCGGCG CCACCATGGC CGAGGTGCTG
CAATCCATAC AGCGCGTGAC CGACCTCATG GGCGAGATCA GCAATGCCAG CGACGAGCAA
AGCGCCGGTG TGGCCCAGGT CGGGCAGGCC ATGAGCCAGA TGGACCAGGT CACGCAGCAA
AACGCCGCCC TGGTGGAGGA AAGCGCGGCG GCGGCCTCCA GCCTCAAGTC CCAGGCCCAG
CGCCTGGTGC AGGCCGTGGC CATCTTCCGC CTGGGCGACC AGGATGGCGC GGCACAGCAG
CCGCGTTTGC AGGCGCCGCT GCCGGCGTCC GTGCCCACCC GCGCGGCCAC GGCATCCGCG
CTGGCGCCGG CCAGGCCGGC ACCGGCACGA CCCGCAGCTG GCGCGCGCCC TGCAAGCCCT
GCACGCCTGG CTGCGGCCAA ACCGTCTGCC GAATCGCAGG ACTGGACCAG CTTCTGA
 
Protein sequence
MKFNNSPLGL YQINHLFLIE TDTCTTYLES AMNLRTWTVK TKLYAAFTAL ALLVALVSVS 
ALHALDGSDR NLTQFVDGVN ARAHLAEQVR AAVDSRAIAA RNLVLVNTPA DLDMEKTAVY
AAHAAVKSHL DQLKALVAAP GVGEEARALV ARIDQIEQRY GPVALDIVSL ALRQQRDEAI
AKMNSECRPL LAQLIAATDE YSQLTRQHAQ VMVEQATQSY VQQRNMQIGV SAVAFVLALL
MGRLIARGLT RALGAEPAQL GEVARQIADG NLDPGLVRSE APAGSVQASL NAMHQSLASV
VSDVRNNADS VAVASEQIAK GNADLSRRTE QQASALQETA ASMDELSSTV QQNADNARQV
NQLARGASQI AAKGGTVVQE VVGAMQDIHA SSRQIGDIVG VIDSIAFQTN ILALNAAVEA
ARAGEQGKGF AVVAAEVRTL AQRSAQAARE IKQLITDSAT RVSQGAELAD QAGATMAEVL
QSIQRVTDLM GEISNASDEQ SAGVAQVGQA MSQMDQVTQQ NAALVEESAA AASSLKSQAQ
RLVQAVAIFR LGDQDGAAQQ PRLQAPLPAS VPTRAATASA LAPARPAPAR PAAGARPASP
ARLAAAKPSA ESQDWTSF