| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5741 |
|---|
| Symbol | |
|---|
| ID | 5751362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6389661 |
|---|
| End bp | 6392801 |
|---|
| Gene Length | 3141 bp |
|---|
| Protein Length | 1046 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641300873 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001566754 |
|---|
| Protein GI | 160901172 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.194313 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0197837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAGT TCTTCATTCA CCGGCCCGTC TTTGCCTGGG TCATCGCGTT GTTCATCGTG
CTGCTGGGCG TGCTTGCCAT TCCGCAATTG CCGATCTCGC GCTATCCCAC GGTGGCGCCG
CCCACGGTGA GCCTGTATGC CACCTATCCG GGCGCCACGC CCAAGACGCT CAATGACTCC
GTGGTCTCGC TGATCGAGCG CGAGCTGTCC AGCGTCCGCC ACCTGCTGTA CTTCGAGTCC
TCGGTGGACA CCTCGGGCTC GGCCGAGATC AAGGCCACCT TCAAGCCCGG CACCAACCCC
GAGCTGGCCC AGGTGGATGT GCAAAACCGC ATCAAGGCCG TGGAGCCGCG CCTGCCGCAG
GCCGTGCGCC AGAACGGGCT GCAGGTGGAG TCGGCCACGT CGAGCTTTCT GCTGCTGGTG
GGCCTGATCT CGCCGGGCGG CGAGTTCGAC GAGCTGGCAC TCAATGACTA CATGGCGCGC
AATATCGTCG AGGAGCTGCG GCGCATCGAG GGCGTGGGCC GCGTGCAGCT GTTCGGCACC
GAGCGCGCCA TGCGCGTCTG GGTCGATCCG GCCAAGCTGA TCTCCTACGG GCTGTCCATG
GGCGACCTCA CCCAGGCCAT CCAGCAGCAG AACATGCAGA TCGCCCCGGG CCGCGTGGGC
GATGCGCCCA TCGCCCCGGG CCAGCGCGTG ACCACGCCGC TCACCGTGCA GGGCCAGCTG
ACCTCGCCCG AGCAGTTCGC GGCCATCGTG CTGCGCGCCA ATGCCGACGG CTCCCGCCTG
GTGCTGGGCG ACGTGGCGCG CGTGGAGCTG GGCGCGCAGT CCTATGCCTT CTCCAACCGC
GAGGATGGCA AGCCCGCCAC CAGCGCCGCC GTGCAGCTGT CGCCGGGCGC CAACGCCGTG
CGCACGGCCG CCGCGGTGCA AAAGCGCATG GCCGAGCTGG CCTCCATCCT GCCGCGGGGC
ATGGAGCACA CCATCTCGTT CAATACCGCG CCCTTCGTCA AGATCTCCAT CGAGAAGGTG
GTGCAGACCC TGGTCGAGGC CATGGTGCTG GTCTTCCTGG TGATGTACCT GTTCCTGCAG
AACCTGCGCT ACACGCTGAT CCCGGCCATC GTGGCGCCCG TGGCGCTGCT GGGCACCTTC
GCCGTGATGC TGGTGGCGGG CTTTTCCATC AACGTGCTGA CCATGTTCGG CATGGTGCTG
GCCATCGGCA TCATCGTGGA CGACGCCATC GTCGTGGTGG AGAACGTGGA GCGCCTCATG
GCCGAGGAAG GCCTGTCGCC GCGCGATGCC ACGCTCAAGG CCATGAAGGA GATCACGGGC
GCCATCATCG GCATCACCCT GGTGCTGACG GCGGTGTTCA TTCCCATGGC GTTCGCCAGC
GGCTCGGTGG GCGTGATCTA CCAGCAGTTC ACGCTGTCCA TGGCCGTGTC CATCCTGTTC
TCGGCCTTCC TGGCCCTGAG CCTGACGCCG GCGCTGTGCG CCACCTTGCT CAAGCCGGTG
GCGGCGGGCC ACCACGAGAA GAAGGGCTTC TTCGGCTGGT TCAACCGCGG CTTCGAGCGG
CTGACGAACC GCTACGAGGC CCATGTCACG GGCCTGGTCC GGCGCACGGG CCGCATGATG
CTGCTGTTCG CGGCCATCGT GGCCATCCTG GTGTTTGCGC TGCGCCAGCT GCCCTCGGCC
TTTCTTCCCG AGGAGGACCA GGGCTACTTC ATGGCGTCCA TCCAGCTGCC GGCCGATGCC
ACGGCCGAGC GCACGCTGGA CGTGGTCAAG CGCTATGAGG AGCATGTGGC GCAGCGCCCC
GGCATCGCCT CCAGCATCTC GGTGCTGGGC TTCAGCTTCG CGGGCTCGGG CCCGAACGCG
GCCATGGCCT TCACCACGCT CAAGGACTGG GACCAGCGCG ACGGCGCCAC GGCAGGCGAG
GAAGTCTCGC TCGCGCAAAA GGCCATGGAG CATGCGCCCG AGGGCGCCAT CATGGTGCTG
CAGCCCCCGG CCATCGACGA ACTGGGCACC TCCTCGGGCT TCACCATGTA CCTGCAGGAC
CGCACGGGCC AGGGCCATGC CGCGCTCAAG TCGGCCACCG ACCAGTTGCT GGCGCTGGCC
GGCAGCAGCA GCGTGCTGGG CTCGGCCTAC CAGGACAGCT TGCCCTCGGG CACCAGCGTG
CGGCTGGAGA TCGACCGCCA GAAGGCCCAG GCCCTGGGCG TGGGCTTTGC CGCCATCAGC
GAGACGCTGT CCACGGCCAT GGGCTCGCTG TACGTCAACG ACTTCCCCAA CGCCGGGCGC
ATGCAGCAGG TCATCGTGCA GGCCGACGCG CCCGCGCGCA TGCAGATCGA TGACGTGCTC
CGGCTGAACG TGCGCAATGC CTCGGGCGGC ATGGTGCCGC TGGCCGAGTT CGCCACGCCC
GTGTGGTCGG AAACGCCGCT GCAACTGGTG CGCTACCAGG GCTTCCTGGC GTCGCGCATC
TCGGGCACGC CTGCGCCCGG CACGTCCAGC GGCGCGGCCA TGGCCGAGAT GGAGCGGCTG
GCGGCCCAAC TGCCGCCCGG CTTTGCCGTG GCCTGGACCG GCCAGTCGCT GCAGGAGCGC
CAGTCGGCCG CGCAGGCGCC CCTGCTCATG GCCCTGTCCA TGCTGGTGGT CTTCCTGGTG
CTGGCCGCGC TGTACGAGAG CTGGTCCATC CCGCTGTCGG TGATGCTGGT CGTGCCCCTG
GGCCTGCTGG GCGCGGTGGC GGCCGTGCTG CTGCGCGGCA TGCCCAACGA TGTGTTCTTC
AAGGTGGGCC TGATCACCAT CATCGGCCTG TCGGCCAAGA ACGCCATCCT GATCGTGGAA
TTCGCCAAGC AGCTGCGCGA GGAAGGCCAG GACCTGCGCG AGGCCGCCAT CAAGGCCGCG
CGCCTGCGGC TGCGGCCCAT CCTCATGACC TCGCTGGCCT TTGCGCTGGG CGTGGTGCCG
CTGATGCTGG CATCGGGCGC CAGCGCCGAG ACCCAGCACG CCATCGGCAC GGGCGTGTTC
GGCGGCATGG TCAGCGGCAC GGTGCTGGCC GTGTTCTTCG TGCCCGTCTT CTTCGTCTTC
GTCCTTGAAT GGCAGCGGCG CATCGCCGGG CCGCGCGGCA GCGCGCGCCG GCCGCCGCCC
GCTGCCGACC CCGGAACCTG A
|
|---|
| Protein sequence | MPQFFIHRPV FAWVIALFIV LLGVLAIPQL PISRYPTVAP PTVSLYATYP GATPKTLNDS
VVSLIERELS SVRHLLYFES SVDTSGSAEI KATFKPGTNP ELAQVDVQNR IKAVEPRLPQ
AVRQNGLQVE SATSSFLLLV GLISPGGEFD ELALNDYMAR NIVEELRRIE GVGRVQLFGT
ERAMRVWVDP AKLISYGLSM GDLTQAIQQQ NMQIAPGRVG DAPIAPGQRV TTPLTVQGQL
TSPEQFAAIV LRANADGSRL VLGDVARVEL GAQSYAFSNR EDGKPATSAA VQLSPGANAV
RTAAAVQKRM AELASILPRG MEHTISFNTA PFVKISIEKV VQTLVEAMVL VFLVMYLFLQ
NLRYTLIPAI VAPVALLGTF AVMLVAGFSI NVLTMFGMVL AIGIIVDDAI VVVENVERLM
AEEGLSPRDA TLKAMKEITG AIIGITLVLT AVFIPMAFAS GSVGVIYQQF TLSMAVSILF
SAFLALSLTP ALCATLLKPV AAGHHEKKGF FGWFNRGFER LTNRYEAHVT GLVRRTGRMM
LLFAAIVAIL VFALRQLPSA FLPEEDQGYF MASIQLPADA TAERTLDVVK RYEEHVAQRP
GIASSISVLG FSFAGSGPNA AMAFTTLKDW DQRDGATAGE EVSLAQKAME HAPEGAIMVL
QPPAIDELGT SSGFTMYLQD RTGQGHAALK SATDQLLALA GSSSVLGSAY QDSLPSGTSV
RLEIDRQKAQ ALGVGFAAIS ETLSTAMGSL YVNDFPNAGR MQQVIVQADA PARMQIDDVL
RLNVRNASGG MVPLAEFATP VWSETPLQLV RYQGFLASRI SGTPAPGTSS GAAMAEMERL
AAQLPPGFAV AWTGQSLQER QSAAQAPLLM ALSMLVVFLV LAALYESWSI PLSVMLVVPL
GLLGAVAAVL LRGMPNDVFF KVGLITIIGL SAKNAILIVE FAKQLREEGQ DLREAAIKAA
RLRLRPILMT SLAFALGVVP LMLASGASAE TQHAIGTGVF GGMVSGTVLA VFFVPVFFVF
VLEWQRRIAG PRGSARRPPP AADPGT
|
|---|
| |