| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5582 |
|---|
| Symbol | |
|---|
| ID | 5751202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6205842 |
|---|
| End bp | 6208316 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641300715 |
|---|
| Product | 1A family penicillin-binding protein |
|---|
| Protein accession | YP_001566596 |
|---|
| Protein GI | 160901014 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCAA CCGTGTGCAG CCGTCTCCTA CCGTCCTTCT GGGGCACGCA TTTTTATAAT
GCGGCACTCC TCAGCACTCC CTGCGACATG CCGTCTTCAG ACTCCCGAGA ACCCCAGGCT
GCAAAGCCTC GCTCCGCCCC ATCCAAGCCC ATGCACTGGT TTCCCAAGGC CTTGCTATGG
CTGGCGGGCA TCGCCGTCGC CGGCGCGCTG GCCTTGATGC TGACCGTGGC CGTGGCCCTG
GCCATGGCCT ACCCCAACCT GCCCGACGTG TCCGAGCTGG CCGACTACCG ACCCAAGCTG
CCGCTGCGCG TGTACTCCAG CGAAGGCGCC CTGCTGGGTG AATTCGGCGA GGAGCGGCGC
ACGCTGACCC CTATCCAGGA CATCCCCAAG GTGATGACCG ACGCCGTGCT GGCCATTGAA
GACACGCGCT TTTTCGAGCA TGGCGGCGTG GACTACAAGG GAATGGCCCG CGCCGCGCTG
GCCAATCTGG GCCGCGTGAA AAGCCAGGGC GCATCGACTA TCACCATGCA GGTGGCGCGC
AACGTCTATC TGTCTTCCGA GAAAACCTTT ACGCGCAAAA TTTACGAAGT CTTACTAACT
TTCAAGCTGG AGCATCTGTT GAGCAAAAAC CAGATTCTCG AGATCTACAT GAACCAGATT
TATCTGGGAA ATCGGGCCTA TGGCTTTGCT GCTGCCTGTG AAGCCTATTT CGGCAAGCCA
CTGAAGGACA TCACGGTGGC CGAGGCGGCC ATGCTGGCAG GCCTGCCCAA GGCACCCTCG
GCCTACAACC CGATCAGCAA CCCCAAGCGC GCCCGCTCGC GCCAGCTCTA CATCATCGAG
CGCATGGAGG AAAACGGCTT CATCACCTCC GCCCAGGCCA CTGAAGCCAA GGCCGAGCCG
CTGAAGATCC GCACGGGCTC CTTCAACACC CGCGTACATG CCGAATACGT GGCCGAGATG
GCACGCCAGC TGATCTTTGC CCAGTACGGC AACGAAGCCT ATACGCGCGG CCTGAACGTC
TACACCACCA TCAATGCCGG CGAACAGGAA GCCGCCTACG CCTCGCTGCG CCGCGGCATC
ATGGACTACG AGCGCCGCCA GAAATACCGC GGCCCCGAGA AGTTCGTGGC CCTGCCGGCC
GACGCCGAGG ACCGTGAAGA CGCCATCGAC GACACCCTGG CCAACCACCC CGACAACGGT
GATGTGCTCG CCGCCGTGGT GCTGGATGCC AATCCGCGCA AGATCCTGGC GGCACGCGCC
GACGGCGAAC AGATCGAGAT CACGGGTGAA GGCCTCAAGC CCGCCGAATC GGGCCTGAAC
CCCAAGGCAC CGCCCAACAT CAAGATCCGT CCCGGCGCCG TGATACGCGT GGTCAAGACG
CCCAAGAACA CCTGGGAAAT CACGCAGCTG CCCGAAGTGG AAGGCGCCTT CGTGGCCCTG
GTCCCCCAGA CAGGCGCCTT GCGCGCCCTG ATCGGCGGCT TCGACTTCCA GAAGAACAAG
TTCAACCATG TGACCCAGGC CTGGCGCCAG CCCGGCTCGG CCTTCAAGCC CTTCATCTAC
TCTGCGGCAC TGGAAAAAGG CTTCTCGCCT TCCACCATGA TCAATGACGC GCCGCTGTTC
TTCAGCGCCG GCGTGACGGG TGGCCAGCCA TGGGAGCCCA AGAACTACGA CAGCCGCTAC
GACGGGCCGA TGACCATGCG CACGGGCTTG AACAAGTCCA AGAACATGAT CTCCATCCGC
CTGCTGCAGG CCGTGGGACC CAAGCAGGGC CAGGAGTGGG TCACGCGCTT CGGCTTTGAC
GCCGCCAAGC ATCCGGCCTA CCTGACCATG GCGCTGGGTG CCGGAGCGGT CACGCCGCTG
CAGTTGGCTG CCGGCTACTC CGTGTTCGCC AATGGCGGCC ACCGCGTCAA CCCCTGGCTG
ATTGCCCGTG TCACCGATCA CAAGGGCCGG ATCCTGTCCG AATTCACGCC GCCCCCGGTG
CAGGAACTGC CCCAAGCCAT CGACGCGCGC AACGCCTTCA TCATGGACAG CCTGCTGCAG
GACGTGGCGC GCGTGGGCAC GGCAGCACGC GCGCAGTCCA CGCTCAAGCG TCCCGACCTG
TACGGCAAGA CGGGCACGAC CAACGACTCG GTGGATGCCT GGTTCGCAGG GTTCCAGCCC
ACGCTGGCCG CCGTGTCCTG GATCGGCTAC GACACGCCTC GCAACCTGGG CAGCCGCGAG
ACGGGTGGCG GCCTGAGCCT GCCCATCTGG ATCGGCTTCA TGCAGCATGC CCTCAAGGGC
GTGCCGGTGG CAGAGATGCC TGTGCCCCCT GGCGTCGTGA ACATGGGCGG CGAGTGGTAT
TACGAGGAAA ACGCGCGCAA CGGCGGCGTC AGCAGCCTGG GCATGGACAG CGCCTCCACG
GCCGGCGCTG CAGGCGCCAC GCCTCCGCCC GCCACCGAGG AGCGCAACCG CATCCTCGAC
CTCTTCCGCA ACTGA
|
|---|
| Protein sequence | MLATVCSRLL PSFWGTHFYN AALLSTPCDM PSSDSREPQA AKPRSAPSKP MHWFPKALLW
LAGIAVAGAL ALMLTVAVAL AMAYPNLPDV SELADYRPKL PLRVYSSEGA LLGEFGEERR
TLTPIQDIPK VMTDAVLAIE DTRFFEHGGV DYKGMARAAL ANLGRVKSQG ASTITMQVAR
NVYLSSEKTF TRKIYEVLLT FKLEHLLSKN QILEIYMNQI YLGNRAYGFA AACEAYFGKP
LKDITVAEAA MLAGLPKAPS AYNPISNPKR ARSRQLYIIE RMEENGFITS AQATEAKAEP
LKIRTGSFNT RVHAEYVAEM ARQLIFAQYG NEAYTRGLNV YTTINAGEQE AAYASLRRGI
MDYERRQKYR GPEKFVALPA DAEDREDAID DTLANHPDNG DVLAAVVLDA NPRKILAARA
DGEQIEITGE GLKPAESGLN PKAPPNIKIR PGAVIRVVKT PKNTWEITQL PEVEGAFVAL
VPQTGALRAL IGGFDFQKNK FNHVTQAWRQ PGSAFKPFIY SAALEKGFSP STMINDAPLF
FSAGVTGGQP WEPKNYDSRY DGPMTMRTGL NKSKNMISIR LLQAVGPKQG QEWVTRFGFD
AAKHPAYLTM ALGAGAVTPL QLAAGYSVFA NGGHRVNPWL IARVTDHKGR ILSEFTPPPV
QELPQAIDAR NAFIMDSLLQ DVARVGTAAR AQSTLKRPDL YGKTGTTNDS VDAWFAGFQP
TLAAVSWIGY DTPRNLGSRE TGGGLSLPIW IGFMQHALKG VPVAEMPVPP GVVNMGGEWY
YEENARNGGV SSLGMDSAST AGAAGATPPP ATEERNRILD LFRN
|
|---|
| |