| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5577 |
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| Symbol | |
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| ID | 5751197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 6200561 |
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| End bp | 6202711 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641300710 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001566591 |
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| Protein GI | 160901009 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.515424 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGGCA CACATCGCAG AATACTGCAC AAGGCTCGCT GGGGAATCGC CGTCGGCGGT
TGGTTTCTGG GCTCCTTGGC CTGGGCGCAG TCCGCGATAG AGTCGGTTTC CGGCTCCATC
CAGGGAGGCA CCGAGGTCGT GCGCATTGAG CTTTCCGAAG CGTTGGCGGC GGACCCCACC
GGATTTGCAA TCCAGTCGCC TGCGCGGATT GCCCTGGACT TTCCAGGTGC AACCAATGGC
ACGGGCAAAT CTGTGGTCGA GCTCAATCAG GGCAACCTGC GCTCCATCAA TATCGTGGAG
GCGTCTGGTC GTTCCCGCTT AGTGCTGAAT CTGAAGTCGG CGACTTCTTA CCGTACTGAA
AGGCAAGGCA AGGCCCTGCT GATACTGTTG GATCCAGTGG CAACATCCAC GGCCGTGAAG
CCTCCCGCAC AGCAGGGAGT GTTTGAAACC AAAGCAGTTG CTGGTACTGA TGTCCAGCTC
ATTCGGGATG TTGATTTCCG TCGCGGCAGT GATGGCTCGG GCCGCATCGT TGTTGGTCTG
AGCAGCAGCC AGGTCGGCGT GGATCTTCGA CGCGAAGGCA AGGAGCTTGT GGTCGACTTC
CTGCGCTCCT CCTTGCCTGA AGGTTTGCGC CGGAAGCTGG ATGTGGTTGA TTTTGGAACG
CCGGTGCAGA CGATTTCCTC CGTGCAGCAA GGTGAGTCGG TTCGCATGCG CATCGCTCCG
GTTGGTGACT GGGAGCACAG CGCTTATCAG AGTGACAGCC AGTTTGTGAT TGAAGTCCGT
CAGAAAAAGG CGGATGTGAG CAAGCTGACG CAAGGTCCCG GCTACAGCGG TGAAAAGCTC
TCTCTAAACT TCCAGAATAT TGAAGTGCGG TCGCTGTTGC AGGTGATTGC TGATTTCACA
AACTTCAATA TCGTGACTTC GGACACGGTT TCCGGTGCAT TGACCTTGCG CCTCAAGGAT
GTTCCCTGGG ATCAAGCACT GCAGATCATC ATGGACGCCA AGGGTCTGGG CATGCGCAAG
TCCGGCTCGG TGCTTTGGAT TGCACCCAAG GATGAGATCG ATGCTCGGAC CAAGCGAGAC
TTTGAGTCAG CAATGGAGAT TCAGAAGTTG GAGCCACTTC GAACTCAAGG TTTTCAGTTG
AATTACGCGA AGTCGGCAGA TATTTTGCTG CAGATCACAG CAAATAATAG TGGGGGAGGG
GTGGGTAATA GCGTTTCAAG CAGATTTTTG TCTGAGCGTG GGTCTGCTAT TTCCGAGCCA
CGAACCAATC AGTTGTTTGT GACCGATACA CCAGCAAAGC TGGAAGCAGT GAAGGCACTT
TTGCTAACCC TGGATGTGCC AGTGCGGCAA GTCCTAATTG AGGCTCGAAT CGTTGAAGCC
CGTGACACGT TTGGGCGTGC CCTGGGTGTC AGACTCGGTG GTGGCGATTT GCGTGCTCAA
CGAGGTGGCG ATGGTGGATA CGGCATTGGT GGAGATAATA GACTGGTTTT TGGAACTGGA
TATGAGAATG CAGTTGCTTC CAGTGGCTCG GGGGGAACGG TGAATACTTC GGGTAATTTT
GTGAATTTGC CTGCCGCAAA ACTTACTGGA GTAAGTGGTA CAGGATCTTT TGCATTGTCT
ATTTTTAACT CCGCCGCTAA TCGTTTTCTG GCTTTGGAGC TTTCTGCGAT GGAGGCTGAT
GGTCAAGGGA AAATAATATC CAGCCCCAGG TTGGTGACCG CTGACCAGAC GAAGGCTTTG
ATAGAGCAAG GCACAGAGTA TCCCTATTCT GTGACGGCGC CCAATGGTGC CACTACAATC
GCCTTTAAAA AAGCCGTGCT GAAGTTGGAG GTTACGCCTC AGATTACTCC GGAGGGAGAT
ATCATTCTTG ACTTGGATGT CAACAAAGAT TCTCGAGGTG AGACCACAAC CCAAGGTGTA
GCAATTGATA CAAAGCATAT CAAAACACAG GTTCTTGTTC AAAATGGGGG CACTGTGGTG
ATTGGCGGTA TCTTTGAGAT GGAAGAGACC AATCAGGAAA GCAAAATTCC TTTTCTGGGA
GATGTCCCTG TGCTTGGTCA TCTTTTTAAG AGCCGAGTGC GAGAGTCCCA GAAGCGGGAA
ATGCTGGTGT TTATCACGCC AAAAATGATA TCCGATGGTC TCAAGCGTTA A
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| Protein sequence | MMGTHRRILH KARWGIAVGG WFLGSLAWAQ SAIESVSGSI QGGTEVVRIE LSEALAADPT
GFAIQSPARI ALDFPGATNG TGKSVVELNQ GNLRSINIVE ASGRSRLVLN LKSATSYRTE
RQGKALLILL DPVATSTAVK PPAQQGVFET KAVAGTDVQL IRDVDFRRGS DGSGRIVVGL
SSSQVGVDLR REGKELVVDF LRSSLPEGLR RKLDVVDFGT PVQTISSVQQ GESVRMRIAP
VGDWEHSAYQ SDSQFVIEVR QKKADVSKLT QGPGYSGEKL SLNFQNIEVR SLLQVIADFT
NFNIVTSDTV SGALTLRLKD VPWDQALQII MDAKGLGMRK SGSVLWIAPK DEIDARTKRD
FESAMEIQKL EPLRTQGFQL NYAKSADILL QITANNSGGG VGNSVSSRFL SERGSAISEP
RTNQLFVTDT PAKLEAVKAL LLTLDVPVRQ VLIEARIVEA RDTFGRALGV RLGGGDLRAQ
RGGDGGYGIG GDNRLVFGTG YENAVASSGS GGTVNTSGNF VNLPAAKLTG VSGTGSFALS
IFNSAANRFL ALELSAMEAD GQGKIISSPR LVTADQTKAL IEQGTEYPYS VTAPNGATTI
AFKKAVLKLE VTPQITPEGD IILDLDVNKD SRGETTTQGV AIDTKHIKTQ VLVQNGGTVV
IGGIFEMEET NQESKIPFLG DVPVLGHLFK SRVRESQKRE MLVFITPKMI SDGLKR
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