| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5489 |
|---|
| Symbol | |
|---|
| ID | 5751108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6093959 |
|---|
| End bp | 6095176 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641300621 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001566503 |
|---|
| Protein GI | 160900921 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.759932 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0666494 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAG CCGCGTCCAA AGGAATCAAG GAATTTGTCT TTGAATGGGA GGGCAAGGAT
CGCAACGGCA AGATCGTCCG CGGCGAAACC CGGGCCGGGG GCATCAATCA GGTCCAGGCC
ATGCTGCGCC GTCAGGGCGT GCTTCCCAGC AAGATCAAGA AGCGCCGTAC GCGCGGCGGC
AAGAAGATCA AGCCCAAGGA CATCGCGCTG TTCACGCGCC AGATGGCCAC GATGATGAAG
GCCGGCGTCC CTCTGCTGCA GGCCTTCGAC ATCGTCGGGC GCGGCAACAC CAACCCCAGT
GTGACGCGCC TGCTGGCCGA TATCCGCTCC GACGTGGAGA CCGGCACCTC ACTGAATGCG
GCCTATCGCA AGCACCCCCT TTACTTCGAC AGCCTCTACT GCAATCTGGT GGAGGCAGGC
GAAGCTGCCG GTATCCTGGA AGCCCTGCTG GACCGCCTGG CCACCTACAT GGAGAAGACC
GAAGCCATCA AGTCCAAGAT CAAGTCGGCG TTGATGTATC CGATTTCGGT GGTCGTTGTG
GCCTTCATCG TCGTGACCAT CATCATGCTT TTCGTGATCC CGGCCTTCAA GGACGTGTTC
AGCTCGTTCG GTGCGGATCT GCCGGCCCCG ACTCTGTTCG TGATGGGTGT CAGCGACATC
TTTGTCCAAT GGTGGTGGGT AATCTTCGGC GTGATCGGAG GCGGCTTCTA CTTCTTCATG
CAGGCCTGGA AGCGCAATGA GCGCATGCAG CAGTTCATGG ATCGTGCAAT GTTGAAGATG
CCGGTCTTTG GCGCATTGAT CGAAAAGTCC TGCGTTGCAC GCTGGACGCG CACGCTGTCG
ACCATGTTTG CTGCAGGCGT TCCGCTGGTC GAAGCACTGG ATTCCGTCGG CGGCGCCTCC
GGGAATGCCA TCTACGCCAA TGCCACCGAG AAGATCCAGC AGGAAGTCTC CACCGGCACC
AGCCTCACGG TGGCCATGAC CAATGCCAAC GTCTTTCCCT CCATGGTGCT GCAGATGTGC
GCCATCGGCG AGGAATCCGG CTCCATCGAC CACATGCTTG GCAAAGCAGC CGATTTCTAC
GAGGAAGAGG TCGATGACAT GGTGGCAGGC CTGTCCAGCC TGATGGAGCC TATCATCATT
GTTTTCCTGG GCACCCTCAT CGGCGGCATC GTGGTTTCGA TGTACCTGCC CATCTTCAAG
CTGGGTCAGG TGGTCTGA
|
|---|
| Protein sequence | MATAASKGIK EFVFEWEGKD RNGKIVRGET RAGGINQVQA MLRRQGVLPS KIKKRRTRGG
KKIKPKDIAL FTRQMATMMK AGVPLLQAFD IVGRGNTNPS VTRLLADIRS DVETGTSLNA
AYRKHPLYFD SLYCNLVEAG EAAGILEALL DRLATYMEKT EAIKSKIKSA LMYPISVVVV
AFIVVTIIML FVIPAFKDVF SSFGADLPAP TLFVMGVSDI FVQWWWVIFG VIGGGFYFFM
QAWKRNERMQ QFMDRAMLKM PVFGALIEKS CVARWTRTLS TMFAAGVPLV EALDSVGGAS
GNAIYANATE KIQQEVSTGT SLTVAMTNAN VFPSMVLQMC AIGEESGSID HMLGKAADFY
EEEVDDMVAG LSSLMEPIII VFLGTLIGGI VVSMYLPIFK LGQVV
|
|---|
| |