| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5278 |
|---|
| Symbol | |
|---|
| ID | 5750890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5844620 |
|---|
| End bp | 5845666 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641300403 |
|---|
| Product | peptidase S49 |
|---|
| Protein accession | YP_001566292 |
|---|
| Protein GI | 160900710 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.602314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCC CCATACCTCC GGAAAATCCT GGCTCCGCAT CGCACCCATC CCCGGGTGCG
GACCTGTGGG CCCGGGCCAC GCCCGCCACG GCGGCTGCCG ATGCGCGCAC GGCGGCATCG
AGCGGCTGGG AGCGGGAGGT GCTGGAAAAG CTGGTCTTCG CCACCATCAA CGAGCAGCGT
GCCTCGCGCC GCTGGCGCCT GTTTGGCCGC CTGCTGTGGA CGGCGCTCAT CCTCGTGGTG
CTGTGGGTGC TGTTTGCCAA GGACACGGCG ACCACGACCA GTTCCTCCCC GCACACGGCC
GTGGTCGAGG TCAAGGGCGA GATCGCCGCA GGTGCCGACG CCAGCGCGGA ATTCGTGGTG
GCCGCCATGC GCAGTGCCTT CGAGGATTCG GGCTCGCGCG CCGTGGTGCT GCTGATCAAC
TCGCCGGGCG GCAGCCCTGT GCAGGCCGGC ATCATCAATG ACGAAATCGT GCGGCTCAAG
GGCAAGTACG ACAAGCCCCT GTATGCCGTG GTGGAAGAGA CCTGTGCTTC GGCCGCCTAC
TACATTGCCG CCGCCGCCGA TGAGATCTTT GTGGACAAGG CCAGCATCGT GGGCAGCATC
GGCGTGCTCA TGGATGGCTT TGGCTTCACC GGCGCCATGG AAAAGCTCGG CGTGGAGCGC
CGCCTGCTGA CGGCTGGCGA GAACAAGGGT TTCCTGGACC CGTTCAGCCC CATGTCCGAA
GGGCAGCGCG AACATGCCCA CAAGATGCTG GGCCAGATCC ACTCGCAGTT CATCAACGTG
GTCAAGGCTG GCCGTGGTGA CCGCCTGCAT GAGACGCCCG AGACTTTCAG CGGCCTGTTC
TGGACCGGCC AGCAGGCGGT GGAGATGGGC CTGGCCGACA AGCTGGGCAG TCTTGACTAT
GTGGCCCGTG AAGTGGTCAA GGCGGAAGAG GTGGTGGATT ACACGCGCCG CGACAACGTG
GCCGAGCGCC TGGCCAAGCG TTTCGGCGCG GCTTTTGGCG GCGGTGCGGT GCAGGCACTG
CGTTCCAGCC TCCCGGCTCT GCGCTGA
|
|---|
| Protein sequence | MTSPIPPENP GSASHPSPGA DLWARATPAT AAADARTAAS SGWEREVLEK LVFATINEQR
ASRRWRLFGR LLWTALILVV LWVLFAKDTA TTTSSSPHTA VVEVKGEIAA GADASAEFVV
AAMRSAFEDS GSRAVVLLIN SPGGSPVQAG IINDEIVRLK GKYDKPLYAV VEETCASAAY
YIAAAADEIF VDKASIVGSI GVLMDGFGFT GAMEKLGVER RLLTAGENKG FLDPFSPMSE
GQREHAHKML GQIHSQFINV VKAGRGDRLH ETPETFSGLF WTGQQAVEMG LADKLGSLDY
VAREVVKAEE VVDYTRRDNV AERLAKRFGA AFGGGAVQAL RSSLPALR
|
|---|
| |