| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5248 |
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| Symbol | lysS |
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| ID | 5750860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 5815724 |
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| End bp | 5817283 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641300373 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_001566262 |
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| Protein GI | 160900680 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00462] lysyl-tRNA synthetase-like protein GenX
[TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.178625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC ACAACACCCC ATCCGCAGCG GACCAGACCG CTCCCCAGGA CGAAAACCAA
CTCATCGCCG AGCGCCGCGA AAAACTCAAG GCCCTGCGCG AACAGGTCCG TGAACAGGGC
GGCGTGGCCT TCCCCAACGA CTTCAAGCCC GCCGACCGCG CCGAGGCGCT GCAGCAGGCC
CATGCCGACA AGAGCGCCGA GCAGTTGGAC GCCGAAGCCG TGCAGGTCAG CCTGGGCGGC
CGCATGATGC TCAAGCGCGT CATGGGCAAG GCCAGCTTTG CCACCATCCA GGACGGATCG
CTGGGCCCCA CGCACGGCCG CATCCAGCTG TACATCACGC GCGACACCGT GGGCGAGGAG
GTCTATGCGG CCTTCAAGCG CTGGGACCTG GGCGACATCC TGGGCGCCGA GGGCACGCTG
ATGAAGACCA AGACCGGCGA GCTGTCGGTC AAGGTGCAGA CGCTGCGCCT GCTCACCAAG
AGCCTGCGTC CCATGCCCGA CAAGTTCCAC GGCATGGCCG ACCTGGAGCA GAAGGTGCGC
CAGCGCTATG TGGACCTGAT GATGGACGAG CAGGCCCGCC GCCGCTTCAT CGCACGCAGC
AAGGCCGTCT CGGGCATCCG CGAATTCATG GTGGAGCACG GCTTCCTGGA AGTGGAAACG
CCCATGCTGC ACCCCATTCC CGGCGGCGCC AACGCCAAGC CCTTCGTCAC CCACCACAAC
GCGCTGGACC AGGAGATGTA CCTGCGCATC GCGCCCGAGC TGTACCTCAA GCGCCTGGTG
GTCGGCGGCT TCGAGCGCGT GTTCGAGATC AACCGCAACT TCCGCAACGA AGGCATCTCG
GTTCGCCACA ACCCCGAGTT CACCATGATG GAGTTCTACG CGGCCTACTG GAACTACCGC
GACCTGATGG ACTACACCGA GGCCCTGGTG CGCGACGCCG CGCAAAAGGC CGTGGGCACG
CTGCAGCTGA CCTACGGCGG CAAGCCCGTG GACCTGTCCC AGCCCTTCCA GCGCCTGACC
ATTCCCGAGG CCATCGTCAA GTTCACCGAG GCGGGCGACA AGGTGGCCGA CCGCGAATGG
CTGACCAATG CGCTGCGCAA GCTGGGCATG ACGGAAGAAA AGGACCGCCT GTCCACCCGC
ACGCTGGCCA GCCTGCAGGT GCTGTACTTC GAGGAAGTGG TGGAAGAAAA GCTCTGGCAG
CCCACCTTCA TCATGGAGCA CCCCACCGAG ATCTCGCCGC TGGCGCGCGC CAATGACGAG
CGCCCCGAGG TCACCGAGCG CTTCGAGCTG TACATCACGG GCCGCGAATT CGGCAACGGT
TTCTCCGAGC TCAACGACGC CGAGGACCAG GCCGCGCGCT TCAATGCCCA GGTCCAGGCC
AAGGACGGTG GCGACGACGA AGCCATGTAC TTCGACCACG ACTTCGTTCG TGCCCTCGAG
TACGGCATGC CCCCCACAGG CGGCTGCGGC ATCGGCATCG ACCGCCTGAT GATGCTGCTG
ACCGACAGCG CCAGCATCCG CGACGTGATC CTGTTCCCTG CCCTGCGCCG CGAACAGTAA
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| Protein sequence | MTEHNTPSAA DQTAPQDENQ LIAERREKLK ALREQVREQG GVAFPNDFKP ADRAEALQQA
HADKSAEQLD AEAVQVSLGG RMMLKRVMGK ASFATIQDGS LGPTHGRIQL YITRDTVGEE
VYAAFKRWDL GDILGAEGTL MKTKTGELSV KVQTLRLLTK SLRPMPDKFH GMADLEQKVR
QRYVDLMMDE QARRRFIARS KAVSGIREFM VEHGFLEVET PMLHPIPGGA NAKPFVTHHN
ALDQEMYLRI APELYLKRLV VGGFERVFEI NRNFRNEGIS VRHNPEFTMM EFYAAYWNYR
DLMDYTEALV RDAAQKAVGT LQLTYGGKPV DLSQPFQRLT IPEAIVKFTE AGDKVADREW
LTNALRKLGM TEEKDRLSTR TLASLQVLYF EEVVEEKLWQ PTFIMEHPTE ISPLARANDE
RPEVTERFEL YITGREFGNG FSELNDAEDQ AARFNAQVQA KDGGDDEAMY FDHDFVRALE
YGMPPTGGCG IGIDRLMMLL TDSASIRDVI LFPALRREQ
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