| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5184 |
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| Symbol | |
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| ID | 5750796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5748824 |
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| End bp | 5751085 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641300309 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001566198 |
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| Protein GI | 160900616 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.161227 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATCT TCAACAAAGT CACCAAGACC TTCCAGTGGG GCCAGCACAC GGTCACCATG
GAAACCGGCG AGATCGCCCG CCAGGCTTCC GGCGCCGTGC TGGTCAACAT CGATGACACC
GTGGTGCTGG CCACCGTTGT GGCGTCCAAG CAGGCAAAGT CCGGCCAGGA CTTCTTCCCG
CTGACCGTCG ATTACATCGA GAAGACCTAC GCCGCAGGCA AGATCCCCGG CAGCTTCTTC
AAGCGCGAAG CCAAGCCCAG CGAACTCGAA ACCCTGACCA GCCGCCTGAT CGACCGCCCG
ATCCGCCCGC TGTTCCCCGA AGGTTTCTAC AACGACGTGC ACGTGGTCAT CCACACCGTG
TCGCTGAACC CCGAAGTCGA TGCCGACATC GCCGCCCTGA TCGCCACCTC GGCTGCCCTG
TCCGTGTCGG GCATTCCCTT CAATGGCCCC ATCGGTGCCG CCCGCGTGGG CTTCATCAAT
GGCGAGTACG TGCTCAACCC CGGTCAGACC CAGCGCAAGG ATTCGCAGAT GGATCTGGTC
GTGGCCGGTA CCGAAGCCGC CGTGCTGATG GTGGAGTCCG AGGCGCAGCA ACTGCCTGAA
GACGTGATGC TGGGCGCCGT GGTCTTTGGC CACGAGCAAG GCCGCATCGC CATCGACGCC
ATCCACGAGC TGGTGCGCGA AGCCGGCAAG CCCGTCTGGG ACTGGGTCGC TCCAGCCAAG
GATGAAGAGC TGATCGCCAA GGTGGCGGCA CTGGGCGACG AAGCCCTGCG CACGGCCTAC
CAGATCCGCA ACAAGCAAAG CCGCACGCAA GCCTGCCGCG AAGCCTACGC CGCCGTGAAG
GCCGGCCTGA CGGCCCAGGG CGTGGAGTTC GACGGCGTCA AGGTCGAAGG CATGCTGTTC
GACATCGAGG CACGCATCGT TCGCAGCCAG ATCCTAGCCG GCGAGCCGCG CATCGACGGC
CGCGACACGC GCACCGTGCG CCCCATCGAA ATCCGCAACT CCGTGCTGCC CCGCACGCAC
GGCTCGGCCC TGTTCACGCG CGGCGAGACG CAGGCCCTGG TCGTGTCCAC GCTGGGCACC
GAGCGCGATG CACAACGCAT CGACGCGCTG GCTGGCGAGT TCGAGGACCG CTTCCTGTTC
CACTACAACA TGCCTCCCTT TGCCACCGGC GAAGTGGGCC GCATGGGCTC GACCAAGCGT
CGCGAAATCG GCCACGGCCG TCTGGCCAAG CGCGCCCTGG CGGCCTGCCT GCCCAGCAAG
GAAGAATTCC CCTACACCAT CCGCGTGGTG TCGGAAATCA CCGAGTCCAA CGGCTCCTCG
TCCATGGCTT CGGTCTGCGG CGGCTGCCTG TCGATGATGG ATGCAGGCGT TCCGATGAAG
GCCCACGTGG CCGGCATCGC CATGGGCCTG ATCAAGGAAG ACAACCGCTT CGCCGTGCTG
ACCGACATCC TGGGCGATGA AGATCATCTG GGCGACATGG ACTTCAAGGT GGCCGGCACC
ACCAGCGGCA TCACTGCGCT GCAGATGGAC ATCAAGATCC AGGGCATCAC CAAGGAAATC
ATGCAGGTCG CCCTGGCCCA GGCTAAGGAA GCGCGCATGC ACATCCTGGG CAAGATGCAG
GAAGCCATGG GCGAAGCCAA GGCCGAGATC TCGTCCTTCG CTCCCAAGCT GTACACGATG
AAGATCAACC CCGAGAAGAT CCGTGACGTG ATCGGCAAGG GCGGCTCCAC CATCCGTGCA
CTGACCGAAG AGACCGGCAC GCAGATCGAC ATCGGCGAAG ACGGCACCAT CACCATTGCC
TCCAGCGATG CCGCCAAGGC CGACGAAGCC AAGCGCCGCA TCGAAGAGAT CACGGCCGAA
GTCGAAATCG GCAAGATCTA CGAAGGCCCG GTCACCAAGA TCCTGGACTT CGGTGCTCTC
GTGAACCTGC TGCCCGGCAA GGACGGTCTG CTGCACATCA GCCAGATCGC CCACGAGCGC
GTGGAGCGCG TCGCCGACTA CCTGCAGGAA GGCCAGATCA TCAAGGTCAA GGTCATGGAG
ACCGACGAAA AGGGTCGTGT CAAGCTGTCG CTGAAGGCGT TGACCGAGCG TCCTGCCGGC
ATGGAGCGCA GCGACCGCCC CGCGCCTGCC GAGCGTGAGT TCCGCCAGCC GCGTGAGCCC
CGCCAGCAGC GCGAGTTCCG CGAGCCGCGT GAACCCCGCG AGCCCCGTGA CGGCGGCCGT
CCGGCTGCCG AGGGCGAGCA GCAACAGCAA CAGCAGCAGT AA
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| Protein sequence | MSIFNKVTKT FQWGQHTVTM ETGEIARQAS GAVLVNIDDT VVLATVVASK QAKSGQDFFP
LTVDYIEKTY AAGKIPGSFF KREAKPSELE TLTSRLIDRP IRPLFPEGFY NDVHVVIHTV
SLNPEVDADI AALIATSAAL SVSGIPFNGP IGAARVGFIN GEYVLNPGQT QRKDSQMDLV
VAGTEAAVLM VESEAQQLPE DVMLGAVVFG HEQGRIAIDA IHELVREAGK PVWDWVAPAK
DEELIAKVAA LGDEALRTAY QIRNKQSRTQ ACREAYAAVK AGLTAQGVEF DGVKVEGMLF
DIEARIVRSQ ILAGEPRIDG RDTRTVRPIE IRNSVLPRTH GSALFTRGET QALVVSTLGT
ERDAQRIDAL AGEFEDRFLF HYNMPPFATG EVGRMGSTKR REIGHGRLAK RALAACLPSK
EEFPYTIRVV SEITESNGSS SMASVCGGCL SMMDAGVPMK AHVAGIAMGL IKEDNRFAVL
TDILGDEDHL GDMDFKVAGT TSGITALQMD IKIQGITKEI MQVALAQAKE ARMHILGKMQ
EAMGEAKAEI SSFAPKLYTM KINPEKIRDV IGKGGSTIRA LTEETGTQID IGEDGTITIA
SSDAAKADEA KRRIEEITAE VEIGKIYEGP VTKILDFGAL VNLLPGKDGL LHISQIAHER
VERVADYLQE GQIIKVKVME TDEKGRVKLS LKALTERPAG MERSDRPAPA EREFRQPREP
RQQREFREPR EPREPRDGGR PAAEGEQQQQ QQQ
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