| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5124 |
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| Symbol | |
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| ID | 5750735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5676848 |
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| End bp | 5679895 |
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| Gene Length | 3048 bp |
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| Protein Length | 1015 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641300248 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001566138 |
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| Protein GI | 160900556 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.247215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTTTG ATATGCGCGC AAAGCCTCCC CGCAGCCTGT CCCGCCTGCT GAACGCAGAA
CCGCTGACCC AGACCACGGT GGCCGTCTGG GTGGGCCTGT GCTGCGTGCT GCTGGCCACG
GTGGCGTACT GGACGGTGCT GGTGGACAGC CACCGCACGC AGCGCAGCTT TACCGAGTCC
CAGTCGTGGC TGCGGGTGGG GCAAATGTCG CATGCGGTAT CGGTGCAGGT GCAGACCCTG
CTCTCCGGCC TGGACTACAC CATGCGCGGC CTGGAGTCCG ACTTTGCCGA TGGCGATGTC
GACGGGTTCC GGCGTGCCGT GCAGACCACG TTCGACGCCT ACCCGGCCGG CACCTTCCTG
CAGATCGCCG TGGCCGACGA GAAAGGGGAC ATCGTGTACT CCAATCTCCA GCAGGATGCG
GAGACGCGGG CTGCCAAGGT CTCCATCCGG GACCGCGAGC ATTTCCAGGT GCATGCCAAC
CGCGAGAACA TGGGCATGTT CATCGGCCGC CCCGTGCAGG GGCGTGTCTC CCACAAATGG
ACCATACAGC TGAGCCGCGC GCTGTACCGC CAGGGGCAGT TCTCGGGCGT GCTGGTGCTG
TCGCTGTCGC CTGAATACAT TTCGCGCTAT TTCCAGTCCA TCTTCGATGG CGCCAACGAC
GTCATCCTGC TGCTGCGCAC CGATGGCGCC TACCTGGCGC GCTCGCAGGG GCAGGAGCAG
GTGATGGGCC GCTCGGTCTC CGATGTGCGC GTGGCGCTGT TCGCCCCGGC CCTGGAGCGC
GGCACCTACG AGGCCGATTC GTCCGTCGAT GGCGTTCAGC GCATGTATGC CTGGAGCCGG
GTGGAGGGCT ATCCGCTGAT CGTCAGTGCA GGGCTGGACA AGAAAGCCAT CTTCGAGCCG
CTGGAGGCAT CGCTGGAGCG CGGCCTGCTG CGCAACGGCA TAGGCACGGC CGTGCTGCTG
CTGGGCATGC TGCTGACGCT GTGGCTGGCG CGCCAGCGCC AGCTCAGCGA GCGCATGCGT
CTGCAGGGTG AGCGACGCTT CGCGCGGCTG GCGCAGGAGG TGCCGGGCGG GCTGTTCCAG
TTCCGCATAG GCGCGGATGG ACAGTTCCGG TTCCCTTTCA CCAGCCCCGG ATTCTTCGAA
CTGCATGGCG CCAAGGCCGA TGCCGCCAGG TTTGCCGACC ATGAACTGCT CAAGCGGGTC
CACCCCGAGG ATCTGCCGGC CCTGGCGGCC TCGGTGCAGG CCAGCGTGGG CAGCAAGGGT
GTCTGGGAGC ACAAGTACCG CGTCTACGGC CCTGCAGGCG AGCTGCGCTG GCTGCATGGT
CACGCCCGGC CGCAGCAGGA GGAAGACGGC TCCCTGCTGT GGCATGGCTA TGTGCACGAT
GTGACGCAGG ACCAGGCCAT GCAGGAATCC ATACGCCACA GCGAGGAACG CCTGCGCCTG
ACCGTGGGCG CCGTGCGCGA CGGCCTGTGG CAGTGGGACT GCCGCAGCGG CCATGTGGAA
TGGGATGCCC GCTGCTACCA GATGCTGGGC TTCGAGGCCG CGCAGTTCCC CATGACCTAT
GACGCCTTCT GCGCCATGGT CCATCCCTCG GACAGGGCGC GGATGCTGGC GCGGCTGCAG
CGCCATGCCG AGGCCGGGGC CGACTTCCGC GTGGAGATGC GGCTGCGCAG CTCGGCCGAC
AGCTGGCTGT GGGTGGAGTC GCGCGGCGAA ATCACCCAGC GCGATGCCGA CGGCAAGCCC
GTGCGCATGC TGGGGACGCA CACCGACATA CAGCAGCGCG TGGAGCAGTC CCGGCTCATC
AAGGCCTTGC TGGACCGGGG AAGCGCCCTG ATCGTCATGG CCGGTCCCCA GCGCGAAATC
CTCTATGCCA ACGAGCGCGC GGTGCAGACC TTCGAGATCG AGACAGACCG GCTGCCCGGC
GGCGTGAACT TTCGCGCCCT GCATGTCAGC GACGAGAGCT TCGAGCGCTT CGGCCAGCTC
TACGGACAGC TCAACGCACG CGGCACGGTA CGCACGGAAT GGATTTTGCG CATGCCGTCG
GGCTCGGGCC ACTGGTTCGA CATGCAGGGC TCGCTGCTGG ACCCCGACGA GGACGACGGC
CGCGTCATCT GGACCATGAT CGATACCGAC GCGCGCCGGC GCGCCGAGAC CGCGTTGGCC
GAGACCCAGC ACCGGCTGGA GGCCATCATC GACCGCTTTC CCGCAGGCAT TCTGGTCACC
GACGCCCAGG GCCGCCAGGT GCTGGCCGCC AACCGCATGC TGGCGGCCGC GCTGCGGCTG
GACATGGCGC CTGCCGCCCT GGTGGGGCTG GGCATGCCGG CGCTGATCCA GCTGCTGCCG
CCTTCGGTGG CTGGCGTGCT CAGCGCCGGG CCCGTGGCTG GCCGTTCCCT GCACGCGCTG
CCCGACGACC ACTATGTGGA GATCGAGGGC ATGCAGCTGC GCGACGGTGA CCGCTCCATC
GGCCACTGCT GGGTCTTCCA CGATGCGACG GAGCGGCAGC AGCGCGAATC CCAGCTGGAG
ACCCTGGCGC TGACCGACGC GCTGACCGGC ATTCCCAACC GCCGCGCCTT CATGGAGCGG
CTGACGATGG AGCTGGACCA TCTGCGCAGC GGACTGGTGG CGCACTCCAC GCTGATCATG
CTGGACATAG ACCACTTCAA GCAGGTGAAC GACGGCTACG GCCACGCGGT GGGCGATATC
GTGCTCAAGG AGCTGCTGGC CTCGGTGGCG CAGGAAATGC GCAAGGAAGA CATGGTGGGC
CGGCTGGGCG GCGAGGAGTT TGCCGTGCTG CTGTCCGACA CCGATGCCGA GGTGGGCCTG
CGCCGCGCCG AAAGCCTGCG CGAAACCGTT GCCGCGCGCG CCATCGATGC GGGCCTGGCC
GGCGACCTGC ACATCACCAT CAGCCTGGGC GTGTACGAGC TGCAGCGCAG CGATGCCTCG
GCCCAGGGCT GCCTGGAGCG TGCCGACGCC GCGCTGTACT ACTCCAAGCG CAACGGCCGC
AACCAGTCCA CGCTGTGGAG CGAGCGGCTG CCTGCCATCG CGCGCTGA
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| Protein sequence | MMFDMRAKPP RSLSRLLNAE PLTQTTVAVW VGLCCVLLAT VAYWTVLVDS HRTQRSFTES
QSWLRVGQMS HAVSVQVQTL LSGLDYTMRG LESDFADGDV DGFRRAVQTT FDAYPAGTFL
QIAVADEKGD IVYSNLQQDA ETRAAKVSIR DREHFQVHAN RENMGMFIGR PVQGRVSHKW
TIQLSRALYR QGQFSGVLVL SLSPEYISRY FQSIFDGAND VILLLRTDGA YLARSQGQEQ
VMGRSVSDVR VALFAPALER GTYEADSSVD GVQRMYAWSR VEGYPLIVSA GLDKKAIFEP
LEASLERGLL RNGIGTAVLL LGMLLTLWLA RQRQLSERMR LQGERRFARL AQEVPGGLFQ
FRIGADGQFR FPFTSPGFFE LHGAKADAAR FADHELLKRV HPEDLPALAA SVQASVGSKG
VWEHKYRVYG PAGELRWLHG HARPQQEEDG SLLWHGYVHD VTQDQAMQES IRHSEERLRL
TVGAVRDGLW QWDCRSGHVE WDARCYQMLG FEAAQFPMTY DAFCAMVHPS DRARMLARLQ
RHAEAGADFR VEMRLRSSAD SWLWVESRGE ITQRDADGKP VRMLGTHTDI QQRVEQSRLI
KALLDRGSAL IVMAGPQREI LYANERAVQT FEIETDRLPG GVNFRALHVS DESFERFGQL
YGQLNARGTV RTEWILRMPS GSGHWFDMQG SLLDPDEDDG RVIWTMIDTD ARRRAETALA
ETQHRLEAII DRFPAGILVT DAQGRQVLAA NRMLAAALRL DMAPAALVGL GMPALIQLLP
PSVAGVLSAG PVAGRSLHAL PDDHYVEIEG MQLRDGDRSI GHCWVFHDAT ERQQRESQLE
TLALTDALTG IPNRRAFMER LTMELDHLRS GLVAHSTLIM LDIDHFKQVN DGYGHAVGDI
VLKELLASVA QEMRKEDMVG RLGGEEFAVL LSDTDAEVGL RRAESLRETV AARAIDAGLA
GDLHITISLG VYELQRSDAS AQGCLERADA ALYYSKRNGR NQSTLWSERL PAIAR
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