Gene Daci_5031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5031 
Symbol 
ID5750642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5568411 
End bp5570009 
Gene Length1599 bp 
Protein Length532 aa 
Translation table11 
GC content71% 
IMG OID641300155 
Productdiguanylate cyclase 
Protein accessionYP_001566045 
Protein GI160900463 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAGC GCTCCGCTTC CGAACTGGCA CGCGAAACCC TGCGGCAACT GGCGCTGAAC 
CGCCTGCCGC CCACACCGGA AAACTACACC CGCCTTTATG AACAGGCGGC TGGCGAGCCC
GGCCCCGCCA GCTTTCCCCA GGGCCCGCTG CGCCACGTCC ACGCGCTGCT GCCTGCGCAG
ACGCCGGGGC AAAAGCGCCT GCGCGACCAG CTGGGCGCCG CCATAGAGCG CAGCGACTGG
CAAGGGCTGC AGCAGGTCAT CACCGCCTAT GCCAACGCGG CCCTGCAGCC GCCCGCCTAT
GAGGCCAGGC CCGTGGAGCT GCCCGTGCCG CCGCCCGTCC AGGCCCTGCC CGACGACCTG
ACCCAGCAGT TGGCGCGGCG CTTCGAGGCC TTGTCCACGC TGCTGGACAC CCAGGACACC
AAAACCGGGC AACTGCACCA GCAGCTGATG GAGCAGCTGC AATCGCCGCC CGTGGATGCC
AAGGCCCTGG CGCGGCGCCT GCACGACCAG CACTACCAGC TGTCGTTCGC CATCGCCGAC
CAGCTTCAGG TCCTGCAGTT GATGCAGGAG TTGCTGCAGA CCCTGGTGCA GCACCTGGCC
CAGGACCCCA CGCATGGCAG CTGGCTGGTG CAGCAGCTCA CGGCCATCGA GCAGGCCATC
ACCCCGCCGC TGTCGCCCGC GCCTCTGGCC GATGCACGGC GCGAGCTGCA GACCGTGATC
CACCGGCGCC TGCAGTTGCA GGACGGCATG GCCGCCGCGC AGCAGGCGCT CAGGGACATG
CTGGGCGGCT TCGTCCAGCA CCTGGCGCAG ATCACGAGCA GCAACGAAAC GCTGGGCGCC
CGCATGGAAG AGGCGGCACG CCAGCTGGAC GGCATCCAGC GCCTGGAAGA TGCAGCCCCG
CTGCTGCAGC AGGTGCTGGA GGCCACGCGC ACCATGGCCG CCGGCAGCCG CGTGGCTCAG
GAGGAGCTGC AGGCGCTGCG CGCCCATGTC GATGCCTGCG AGGCCCGCAT CGAAACACTG
CAGCAGGAGC TGGACGAGGC CGCGCGCCGC GCACGCCACG ACCCGCTGAC CGGCCAGCTC
AACCGCCTGG GCGTGAGCGA GGCACTGGAC CGCGAGGTGG CACGCGCACA GCGCCATGGC
CAGCCGCTGA GCGTTGCCCT GGTCGATATG GACGGCATGC AGGCCCTCAA TGCCGAGCTG
GGGCACGCCA TGGGCGATGC CGCGCTGGTG CATGTGGCCC AGCTGGCACG CCAAGGGCTG
CGCCCGGAAG ACGTGGTGGG CCGCTATGAA GGCCAGGCCT TCGTGCTGCT GCTGCCGCAG
ACCCCGGAGA CGGCGGGCGC CCAGGCGCTG CAGCGCCTTC TGCAGTTGCT GGAGCAGGCG
CCTTTGCCCG CATCTGCGCA GACCCCAGGC CAGCCCGCAC CCCGGCCCCT GAGCTTCAGC
GCGGGCGTGG CCCAGTTGCA AGGCCACGAA AACGGCATGG ACGTGCTGCG CCGCGCCGAC
ACCGCCATGC TGCAGGCCAA GGAGCGGGGC AAGCACTGCA TTGCCACGGC ATCAGGCGCA
CAATCGCAGC CAGTTGGAAA TGCAGGCGCC GGCCTTTGA
 
Protein sequence
MAERSASELA RETLRQLALN RLPPTPENYT RLYEQAAGEP GPASFPQGPL RHVHALLPAQ 
TPGQKRLRDQ LGAAIERSDW QGLQQVITAY ANAALQPPAY EARPVELPVP PPVQALPDDL
TQQLARRFEA LSTLLDTQDT KTGQLHQQLM EQLQSPPVDA KALARRLHDQ HYQLSFAIAD
QLQVLQLMQE LLQTLVQHLA QDPTHGSWLV QQLTAIEQAI TPPLSPAPLA DARRELQTVI
HRRLQLQDGM AAAQQALRDM LGGFVQHLAQ ITSSNETLGA RMEEAARQLD GIQRLEDAAP
LLQQVLEATR TMAAGSRVAQ EELQALRAHV DACEARIETL QQELDEAARR ARHDPLTGQL
NRLGVSEALD REVARAQRHG QPLSVALVDM DGMQALNAEL GHAMGDAALV HVAQLARQGL
RPEDVVGRYE GQAFVLLLPQ TPETAGAQAL QRLLQLLEQA PLPASAQTPG QPAPRPLSFS
AGVAQLQGHE NGMDVLRRAD TAMLQAKERG KHCIATASGA QSQPVGNAGA GL