| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5006 |
|---|
| Symbol | |
|---|
| ID | 5750617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5542039 |
|---|
| End bp | 5542857 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641300130 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001566020 |
|---|
| Protein GI | 160900438 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCC GTCTCTTTGC GCAATCGCTG GCCGGTGCGG CGGCTTTCGG CCTGCTGCGC
CCCGCCTTGG CGGCAGGGCA GGGCACAGGC TGTGCCAAGA CCGTGTATCT GACCTTCGAC
ACGGGCCACA TGGGCATTGC CGACCTGGTG GCCGATGTGC TCAAGCGCCA TGCGGTGCCA
GTGACGTTTT TCGCGGCCAA CGAGCCCACC CAGCAAGGCG ATGGCAGCCT GGGCGAGACA
TGGGCGCCCT GGTGGCGCGC ACGCGCTGCC GAAGGCCATG AATTCGCCTC GCACACCTAC
GACCACATGT ACTGGCGCGG TGATCTGCGC GCCTCGAAGA ACGGGCCGGT CACGGGTTTT
CGCGTGCGCC CCTCGGCAGG GCCTCGCGCC AACGAGACCT TCACGGTCGA TGCGGCAGGC
TATTGCGACG AGATCCGCCG ATCCGCACAG CGGCTGCAGC AGATCACCGG GCGCAAGCCC
CTGCCGCTGT TCCGTGCGCC CGGCGGCAAG ACCTCGCCCG CGCTGCTGGA TGCCGCGCGG
CAGGGCGGCT ACATGCATGT GGGCTGGGCC AGCGCGGGTT TTCTGGGCGA TGAGCTGCCC
AGCGACCGCT ACCCGAATGC GCAGCTGCTG GCCCAGGCGC TCAAGAACAT CCGCAGCGGA
GACATCCTGC TGGCCCATCT GGGCATCTGG TCACGCAAGG ACCCCTGGGC ACCTGCCGTG
CTGGAACCTT TGGTCACGGG CCTGCTCAAG CAGGGGTTCT GCTTCCGCAC GCTGCGGGAG
CATCCCGACT ATCGGGATTG GGTAGCAAAA TTCGCATAG
|
|---|
| Protein sequence | MDRRLFAQSL AGAAAFGLLR PALAAGQGTG CAKTVYLTFD TGHMGIADLV ADVLKRHAVP
VTFFAANEPT QQGDGSLGET WAPWWRARAA EGHEFASHTY DHMYWRGDLR ASKNGPVTGF
RVRPSAGPRA NETFTVDAAG YCDEIRRSAQ RLQQITGRKP LPLFRAPGGK TSPALLDAAR
QGGYMHVGWA SAGFLGDELP SDRYPNAQLL AQALKNIRSG DILLAHLGIW SRKDPWAPAV
LEPLVTGLLK QGFCFRTLRE HPDYRDWVAK FA
|
|---|
| |