| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4941 |
|---|
| Symbol | |
|---|
| ID | 5750548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5462687 |
|---|
| End bp | 5464057 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641300061 |
|---|
| Product | membrane-associated zinc metalloprotease |
|---|
| Protein accession | YP_001565955 |
|---|
| Protein GI | 160900373 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.24576 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTGCTGA CCGTAGTTGC ATTCGTGGTC GCGCTGGGCG TGCTGATTGC CGTCCACGAG
TGGGGCCACT ACCGCGTCGC TGTGGCCTGC GGCGTGAAGG TGCTTCGGTT TTCCGTCGGC
TTCGGTCGCC CCATCCTGCG CTGGAAGCGC AAAGGTTCGG ACACGGAATT CGTCATCGGT
GCACTGCCGC TTGGCGGCTA TGTGCGCATG CTCGACGAGC GTGAGGGCGA AGTCCCTGCC
GACCAGCGCC ATCTGGCATT CAACACCCAG CCGCTGCGTG CACGTGCGGC CATCGTGGCG
GCAGGCCCGG TGGCCAACCT CGTGCTGGCC ATTGCGCTGC TGGCCATCGT CAATTGGATG
GGCATGCAGG AGCCCGTGGC GCGGTTGGCC ACGCCGCCGG CGGGCACGGT GCTGCAGATG
GCGGGCGTGC AGGGCGGCGA TCGCGTGCTG CGCATCGCCT TGGGCGACCA GGAGTGGGAA
GAGGTCCGCT CCATCAATGA TCTGCGCTGG ACACTGACGC GCGCCGCGCT CGATGACGAG
TCGGTGCGCA TGGAAGTGCT CCAGGGCCGG CGCACGGCTC CGTCCGAACT GCGGCTGGCG
CTGGCCGGGC AGGTGCAGGG CGAGCCCGAT GCCGCCTTCT TCGAGCGCCT GGGCCTGCTG
GGGCCCTGGA CACAGCCCGT GCTGGACAAG GTGATCGCCG GTGGTGCCGC CGAAAAGGCC
GGCTTGCGCC AGGGCGACCT GGTGCTGCGC GTGGGCAGCA CCCTGGTTGA TGACGGCACC
CAGCTGCGCA ATCTCATCCG CAAGATGGGT GCATCGGGCC AGGTCCAGCA GCAGGTCTGG
CTGGTGGAGC GCGATGGCAG GCAACTGCAG ATCCCCGTGC TGCCCGATCT GGGCCGCTCG
GAAGATGGCA AGGAGAGCAT CGCCCGCATC AGTGCCTACA TCGGCAGCGC TCCCGAGATG
GCTCTGGTGC AGCGCGGTCC GCTGGAAGGC CTGTGGGCTG GCGTGCAGCG CACCTGGGAG
CTGTCGTCGC TGACGCTGCG CATGATGGGC CGCATGGTGA TAGGCGAGGC ATCGCTCAAG
AACATCAGCG GCCCCTTGAC CATTGCCGAC TATGCGGGGC GTTCGGCCAG CATGGGCCTG
GTTCAATACC TGTCGTTCCT GGCGCTGATA AGCATCAGCC TGGGGGTTCT CAACTTGCTC
CCCCTGCCGG TGCTCGATGG CGGGCACCTG ATGTATTATC TTTGGGAGGG CGTGACTGGC
CGAAGCGTGT CGGAAGTCTG GGCCGGGCGC TTGCAGCGTG CAGGCGTGGC GGTTTTGATG
ATGATGATGT CCGTCGCCTT TTTCAACGAT ATCAACCGGC TTTGGGGCTA A
|
|---|
| Protein sequence | MLLTVVAFVV ALGVLIAVHE WGHYRVAVAC GVKVLRFSVG FGRPILRWKR KGSDTEFVIG
ALPLGGYVRM LDEREGEVPA DQRHLAFNTQ PLRARAAIVA AGPVANLVLA IALLAIVNWM
GMQEPVARLA TPPAGTVLQM AGVQGGDRVL RIALGDQEWE EVRSINDLRW TLTRAALDDE
SVRMEVLQGR RTAPSELRLA LAGQVQGEPD AAFFERLGLL GPWTQPVLDK VIAGGAAEKA
GLRQGDLVLR VGSTLVDDGT QLRNLIRKMG ASGQVQQQVW LVERDGRQLQ IPVLPDLGRS
EDGKESIARI SAYIGSAPEM ALVQRGPLEG LWAGVQRTWE LSSLTLRMMG RMVIGEASLK
NISGPLTIAD YAGRSASMGL VQYLSFLALI SISLGVLNLL PLPVLDGGHL MYYLWEGVTG
RSVSEVWAGR LQRAGVAVLM MMMSVAFFND INRLWG
|
|---|
| |