| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4903 |
|---|
| Symbol | |
|---|
| ID | 5750509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5415826 |
|---|
| End bp | 5418021 |
|---|
| Gene Length | 2196 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641300022 |
|---|
| Product | DNA polymerase III, subunits gamma and tau |
|---|
| Protein accession | YP_001565917 |
|---|
| Protein GI | 160900335 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | [TIGR02397] DNA polymerase III, subunit gamma and tau |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.742776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTATC TTGTGCTGGC CCGCAAATAC CGCCCCCGCA ATTTCTCTGA AATGGTGGGG
CAGGAGCATG TCGTTCAGGC GCTCACCAAT GCCCTGACGC AGCAGCGCCT GCACCATGCC
TATCTGTTCA CCGGCACGCG CGGCGTGGGC AAGACCACGG TCTCGCGCAT TCTGGCCAAG
TCGCTCAACT GCCAGGGCGC CGATGGCCAG GGCGGCATCA CGGCAACGCC CTGCGGCGTC
TGTGCGGCCT GTACCGAAAT CGACAGCGGG CGCTTTCCCG ACTACACGGA GCTGGACGCT
GCCTCCAATC GTGGCGTGGA CGAGGTGCAG AGCCTGCTGG AGCAGGCTGT CTACAAGCCG
GTGCAGGGAC GCTTCAAGGT CTTCATGATC GACGAAGTGC ACATGCTCAC GAACACGGCC
TTCAACGCCA TGCTCAAGAC GCTGGAGGAG CCGCCCGAAT ACCTGAAGTT CGTGCTGGCC
ACCACCGATC CGCAGAAGGT GCCCGTGACC GTGCTCAGCC GCTGCCTGCA GTTCAACCTG
CGGCCCATGG CGCCCGAGAC CGTGCTGGAG CATCTGGGCC AGGTGCTGGG GCAGGAAGGC
GTGGCCTCCG AGCCCCAGGC CCTGCGCCTG CTGTCGCGAG CCGCGCGTGG CTCCATGCGC
GATGCGCTGT CGCTGACCGA CCAGGCAATC GCCTTTGGCA GCGGACAGCT GCAGGAGGCC
ACGGTGCGCC AGATGCTGGG CAGCGTGGAC CGCAGCCATG TGTTCCGCCT GATCGAGGCA
CTCGCCCAGG CTGATGGCCA GGTGGTTGTG GAAACCTCCG AGGCGCTGCG CCGCAATGGC
CTGTCTGCCG CCTCCACGCT GGAGGAAATG TGCGCCGTGC TGCAGCGCAT GGCCGTGGCA
CAGGCCGTGC CGCAGATGGC CGCCGACGCC AGCGATCCAG AGGCCGCAGA GATCGCCCGC
CTTGCGGTGC TGATGCCGCG CGACGAGACC CAGCTGCTCT ACAGCATCTG CCTGCATGGC
CGGGCCGAAC TGGGCCTGGC ACCCGACGAG TACGCGGCGC TGACCATGGC GCTGCTGCGG
CTGCTGGCGT TCAAGCCGCA ATCTGCAGAG CCCGCCCCGG GCGCGGCTGA AAAAAAAACT
CCAGCGCTGA CCCCCTCCAC GGCGAAGCCT GAATCTCCCG CGCCCGTTGC GCAGGCGCGG
CCCGCACAGC CCGCTGTGCC TGAGGCTCCC GCTGCCCCAG CCAAGGCGGC CATGCCCGTC
CCGGTCGCGC CTCCTGCTCC TGTCGCGCCT GTCGCGCCTG CCGCATCTCC CGTGACCGCT
GCGCCCGCCG TGGTCGCTCC CGTGGTGCAA GCCGTTGCGG CTGCAGCGCC TGTTCAGGCG
CCCGTGGCCG TGGCCGCGGT TGCCAGGCCG GAACCCGTGC TTGCGCCTGT CCAGGAGGCC
AGGCCTTCCG CTGCTCCAGA GGTGCAGCCG GCCGCCCGTG TCGCCCAAGG GCCCCTGGAC
GAGCCTGTGG ATGAGCCCGT GGACGATGTG CAGGAAGACG AAGACTCTTC TGCCGATGAG
GCGCCGCAGG CGCAGGATGC CGATGCGCCC GACGAGGGTG CCTGGGCCGG GATGCCCGAT
GAAGGCTGGG CCGACGAAGG CCGCTGGAGC GATGACGGAG ATCTGGCCCT TGAGCCGCCT
GCCGCTGCCG TGGCACGGCA GGCCGAACCG CAGATCGACA CTCAGATCGA TGTGCAGGAC
TTCGCTCCCG AACGTGGCCG CCATTCCCCC GGTGCGCCAC CCGCGCCGAC CGTGGAGCGC
ACGCCCGAGG GCGATGTCTG GCACGCTGCC GTCCAGCAAC TGGTGCAGGC CGAGGCCGTC
ACGGCGCTGG CGCGGCAACT GGCGCTGCAG TCGCAACTGG TGGCGCGCGA TGGCGATGCA
TGGACGCTGC GCGTGGAAAG CAGCTCGCTG GCCCAGCCCG CCACGCGTGA GCGCCTGCGT
GCAGCGCTGG AGGCTGCCGG CCTGGCCCGG CAACTGCATG TGGAGCAAGG CGCCGTGGTG
GACAGCCCCG CGCGGCGCAA TGCGGTGGCC AGCCATGAGC GCCAGCGCAT TGCAGAAGAC
ATCGTAATGA ATCATTCTCT GGTGCAGACC CTGATCCGCA GCCATGGCGC GAAAATCGTG
CCCGGCAGTA TCAAGCCCGT ATCCATTCAG CCCTGA
|
|---|
| Protein sequence | MSYLVLARKY RPRNFSEMVG QEHVVQALTN ALTQQRLHHA YLFTGTRGVG KTTVSRILAK
SLNCQGADGQ GGITATPCGV CAACTEIDSG RFPDYTELDA ASNRGVDEVQ SLLEQAVYKP
VQGRFKVFMI DEVHMLTNTA FNAMLKTLEE PPEYLKFVLA TTDPQKVPVT VLSRCLQFNL
RPMAPETVLE HLGQVLGQEG VASEPQALRL LSRAARGSMR DALSLTDQAI AFGSGQLQEA
TVRQMLGSVD RSHVFRLIEA LAQADGQVVV ETSEALRRNG LSAASTLEEM CAVLQRMAVA
QAVPQMAADA SDPEAAEIAR LAVLMPRDET QLLYSICLHG RAELGLAPDE YAALTMALLR
LLAFKPQSAE PAPGAAEKKT PALTPSTAKP ESPAPVAQAR PAQPAVPEAP AAPAKAAMPV
PVAPPAPVAP VAPAASPVTA APAVVAPVVQ AVAAAAPVQA PVAVAAVARP EPVLAPVQEA
RPSAAPEVQP AARVAQGPLD EPVDEPVDDV QEDEDSSADE APQAQDADAP DEGAWAGMPD
EGWADEGRWS DDGDLALEPP AAAVARQAEP QIDTQIDVQD FAPERGRHSP GAPPAPTVER
TPEGDVWHAA VQQLVQAEAV TALARQLALQ SQLVARDGDA WTLRVESSSL AQPATRERLR
AALEAAGLAR QLHVEQGAVV DSPARRNAVA SHERQRIAED IVMNHSLVQT LIRSHGAKIV
PGSIKPVSIQ P
|
|---|
| |