| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4786 |
|---|
| Symbol | |
|---|
| ID | 5750389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5282702 |
|---|
| End bp | 5284840 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641299902 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001565800 |
|---|
| Protein GI | 160900218 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.789588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.608467 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACC ATCAAGCTGC CCGCAGAGCA AGGCTTTCAG TGGGTGTGAC CGCTGGCATC
ATCACCACCG CGCTGGCGGG CGCGGTCCAT GCCCAGGATG CCGCTCCAGC CGATCCGGCA
CAGACGCAGA CGCAGCCTCA ACAGGCCCAC ACCCTGCCCA CACTGCAGGT CAACGCCTCC
CAGTACGACC CTGACGACGT GCGCCCCGAA GGCGTGACCA CGGCGACCAA GACCTACCTG
GCGCCCAAGG ACATCCCGCA GACCATCGAT ACGCTGGAGG TCAACAAGTA CAAGAGCTAC
GGCATCAACG ACCTGGCCAC CATGCTGGAC GGCGTGCCGG GCGTGAACAC CACCTACGAC
ATGCGTGGCG AGGGCGTGTA CATCCGCGGC TTCAAGGCCG ATGAGAGCGA CATCTACCGC
GACGGCGTGC GCGAAAGCGG CCAGGTGCGC CGCAGCACGG CCAATGTGGA GCGCATCGAG
ATCCTCAAGG GCCCGGCCTC GGTGCTCTAC GGCCGCAGCG CGGGCGGCGG CGTGGTCAAC
ATGGTGAGCA AGCAGGCGCG CTTCGACGCC AAGAGCAGCA TCACGCTGCG CGGCGGCTCC
TGGGACAACG TGGGCGGCAC CATCGACATC AACCGCGTGC TCAACGAGAA CGTGGCCGTG
CGCCTGACGG CCGACCGCGA GCAGGCGCAC AGCTTCCGCG AAGGCATACG CAACCGCAAC
GAGATGGTCT CGCCCAGCAT CCTGGTGGAC ACCCGCACGG GGTGGCGCTG GACCGGCCAG
TACACCTATG ACAACGTCTG GCGCGTGCCC GATCGCGGTC CGGTCTATGA CCAGTTGCCA
GCCGGCGTTT CCATCCGCAA GGGCTTCGCG GCGCCTGGCG ACTACGTGGA AGACCGCCTG
CGCGTGCTGC GCTCCGATCT GTCCTATGAC TTCAACAACC GCTGGAGCCT GCGCTGGGTG
GCCAGCAAGC GCGAGGCCAG CCAGGACTTC GACCACTATT TCGCCGGCAC CTACCGCGCC
GCGACCGGCA AGATCACGCC CAACTACGCC TGGCAGCAGA CCCGCAACAC CACGCTGTCC
AACACGCTGG ACCTGACGGG CAAGTTCAGC ACGGGCAGCA TCAAGCACGA TCTGCTGGTG
GGCCTGGAGG CCAGCGAGGA AGAGCGCGCG CCGCGCGTCG GCCAGCCCGG CAGCACCTTT
TCCTACGATC CGTTGCAGCC CATCGTCTGG CCCAGCCGTC CGGTGCAGGG CAAGCCGACC
CAGGACAACT ATCACAAGGG CAAGGGCCAG GCGCTGTACA TGCAGGACCT GGTCAGCCTG
ACCGAGCAGT GGAAGCTGCT GCTGGGCCTG CGCTACGACA GCTATGACTT CCAGAGCACC
AACAAGATCG CCAACCTCAC GCGCAAGACC GACGGCAACG GCTTCAGCCC GCGCGTGGGC
GTGGTGTGGC AGCCGGTGCG TGAGCACAGC TTCTATGCGT CCTGGAACAA GAGCTACTCG
CCCTATGGCG GCCGCGGCAT CCTGACCGTG GAAACCGCCG TGGGCGCGGT GCCGGACGAC
GAGCCCCAGT ACTCGCGCCA GTCCGAGGTC GGCGTCAAGA GCGACTGGCT GGGCGGCGCG
CTGTCCACCC AGGTCTCCGT CTACCAGTTG GAGAAGTACA ACATCCGCTA CCGCCCCGAT
CCCGAGAACG ATCCCTACAC CTGGGCCATC CGGGGCAAGG ACCGTTCGCG CGGCATCGAG
TTCAGCGCGG CGGGCCGCGT GGCCAGTTCC TGGTATGTGC GCGGGGGCGT GGCCTTCATG
GAGGCCAAGG TGGCTGAAGA CGCGCAAAAC CCCGCCAACG TGGGCCTGTA CCTGCGTGAC
ACGGCCAAGC GCAACGGCAA CCTGTTCCTG CGCTATGCGC CCAAGGGCCC CTGGTATGGC
GAAGTCGGCG TGACCTACAC GGGCAGCCGC TTCACCAACG CCGCCAACAC GGCCCTCCTG
CCCGGCTACA CGCGCTGGGA TGCGCTGGTG GGCTGGCGCC AGGACGCCTG GACGGTGACG
GTGGCGCTGT CCAACCTGTT CGACAAGCAG TACTGGCGCT CCAGCTCCAT GCCAGGCGCA
CCGCGCAGCG TTCTGGTCAG CGCCAACTAC CAGTTCTGA
|
|---|
| Protein sequence | MTDHQAARRA RLSVGVTAGI ITTALAGAVH AQDAAPADPA QTQTQPQQAH TLPTLQVNAS
QYDPDDVRPE GVTTATKTYL APKDIPQTID TLEVNKYKSY GINDLATMLD GVPGVNTTYD
MRGEGVYIRG FKADESDIYR DGVRESGQVR RSTANVERIE ILKGPASVLY GRSAGGGVVN
MVSKQARFDA KSSITLRGGS WDNVGGTIDI NRVLNENVAV RLTADREQAH SFREGIRNRN
EMVSPSILVD TRTGWRWTGQ YTYDNVWRVP DRGPVYDQLP AGVSIRKGFA APGDYVEDRL
RVLRSDLSYD FNNRWSLRWV ASKREASQDF DHYFAGTYRA ATGKITPNYA WQQTRNTTLS
NTLDLTGKFS TGSIKHDLLV GLEASEEERA PRVGQPGSTF SYDPLQPIVW PSRPVQGKPT
QDNYHKGKGQ ALYMQDLVSL TEQWKLLLGL RYDSYDFQST NKIANLTRKT DGNGFSPRVG
VVWQPVREHS FYASWNKSYS PYGGRGILTV ETAVGAVPDD EPQYSRQSEV GVKSDWLGGA
LSTQVSVYQL EKYNIRYRPD PENDPYTWAI RGKDRSRGIE FSAAGRVASS WYVRGGVAFM
EAKVAEDAQN PANVGLYLRD TAKRNGNLFL RYAPKGPWYG EVGVTYTGSR FTNAANTALL
PGYTRWDALV GWRQDAWTVT VALSNLFDKQ YWRSSSMPGA PRSVLVSANY QF
|
|---|
| |