| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4765 |
|---|
| Symbol | |
|---|
| ID | 5750360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5259319 |
|---|
| End bp | 5260776 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641299873 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001565779 |
|---|
| Protein GI | 160900197 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.55701 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCCA TGGTGAATCC AACGGTATTG GCGGGAATGG CCCCCGCTCG TTTTCCATCC
TTTTCGCGCA AGGCCTTGCA AGGCGCGATC TGCAGCCTGC TGGTGGGCTG GGGTGCCGGT
GCCTCGGCAC AGGCATCCCA GCCTCCCATG ACCCAGGCGG CTCCAGCCGC CGCCGCGGCC
GCCGAGGCCG CGGCATCCCG TACGCCGATC GTGCCGAAGG CCGGTTCGGC AGCAGAGGCC
ACAGCGGCTG CAGCGGGCCC TTCGGTGGCT TCGGCTGCCG CACAGCGCCT GCCCCAGCTG
AGCCTGAACG AGGTCGTTCG CGCCGTGCTG GACCACAACC CCGATCTGCG CGCTGTCGAG
CAGTCGCGGA CCACGGCGCG CGCAGGTGTG GTCAGTGCCT CGGCGCTGCC CAATCCCAAG
CTCGAATGGA ACCAGGGCCG CAACAGCGCC CGCGTGCCTG GCGCGGCGGC CGGCACGGTG
CAGGGCTGGG CCGTGGCGTT GCCCATCGAG AACCCCGCCG TGCGCGGTGC ACGCGTGGAG
GCCGCGAGGG CAGGCGAGCA GGGCTCGGTG CACTTCGTGG CGACCACGCG CAATGCGCTG
GTGGCCCAGG TGCGGCTGCG CGCCTACGAA ATGGTGCTGC GCGAGGCGGA GGTCGAGGCC
GCCAAGGAGG CGGTGCGCCT TCTGGAGCAG GCCCATGAGC GCGTCCGCGT CCGCGTGGAC
AGCGGCGAGG CGGCCCGCTA CGAAATCATC AAGGCCGATG CCGAAATCAT CCAGGCGCGC
CAGCAGGAGC AGACCGCAAG GCTGCGCGCC GAGCAGGCGC AGCTGTCGCT GGGCCGCCTG
GCCGCAGGCC AGCTGCCCGT GCGCTTCCGC CTGGATGTGT CGCTGGAGGA CCCGCTGCGC
ATCGAGGACA TGGGCGAGAT CGATCCCATG GAGCATCCCG AACTGCGCCA GCTCAAGGCG
GAGGTCGAGC GTGCGCAGGC GCGGCTTGAC GGTGCCAAGG CTTCGCGCTG GCCGGGCGTG
GAGCTGCGCT ACGGCCAGAC GCGCGAGCCC GACGTGCGCC TGAACACGGT GGGCGTGAGC
ATCCAGATCC CCTTGCTCGA CCAGCACCGC GGCCCCATCG ACGAGGCCGC CTCCGAGCTG
GAGCGCGCGC GTCTGCAGCT GGAAGGCCGG CAGATCGAGC TGCGCCAGCA GACGCTGCAG
GCCTGGAAGG AGCTGGAGAT GGCACGACTG CGCACCCAGG CACTGAGCCA GGGTTCGGTG
CGCGAGGCCG AGTCGGCCCT GCGCGTGGCC GAGGCCGCCT ACCGCTTCGG TGAGCGCGGC
ATTCTCGATG TGCTCGATGC GCAGCGCGTG CTGCGCTCCA TCCGTGCAGA CCTGCTCGAC
GCGCGCTACC AGCTGCAGGC GGCGCGCATA CAGCTCGAAT ACCTGGCGGG CCGCTACGAC
GATCCGTCCG CGCTGTGA
|
|---|
| Protein sequence | MHAMVNPTVL AGMAPARFPS FSRKALQGAI CSLLVGWGAG ASAQASQPPM TQAAPAAAAA
AEAAASRTPI VPKAGSAAEA TAAAAGPSVA SAAAQRLPQL SLNEVVRAVL DHNPDLRAVE
QSRTTARAGV VSASALPNPK LEWNQGRNSA RVPGAAAGTV QGWAVALPIE NPAVRGARVE
AARAGEQGSV HFVATTRNAL VAQVRLRAYE MVLREAEVEA AKEAVRLLEQ AHERVRVRVD
SGEAARYEII KADAEIIQAR QQEQTARLRA EQAQLSLGRL AAGQLPVRFR LDVSLEDPLR
IEDMGEIDPM EHPELRQLKA EVERAQARLD GAKASRWPGV ELRYGQTREP DVRLNTVGVS
IQIPLLDQHR GPIDEAASEL ERARLQLEGR QIELRQQTLQ AWKELEMARL RTQALSQGSV
REAESALRVA EAAYRFGERG ILDVLDAQRV LRSIRADLLD ARYQLQAARI QLEYLAGRYD
DPSAL
|
|---|
| |