Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_4629 |
Symbol | rumA |
ID | 5750219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 5087410 |
End bp | 5088882 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641299732 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_001565643 |
Protein GI | 160900061 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000000503319 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGTGAAC CCCGCGACAA CAAGATCCCC GACAACCTGC CCGAAGCCGA CATCGACGCC CCTGCACTGC CCGAAGGCTG GCTGCAGGTG TTGTCCATGG ATATGGACGC CCAGGGCGTG GCCCGCAAGA GCGATGGCAA GGTGGTATTC ATCGACGGCG CCCTGCCTAC CGAACTGGTC AGCGCCAACA CCCATCGCAA GAAAAACAAC TGGGAAGCCG CCAGCCTGAC GGCCATCCAC CGCGAATCTT CCCAGCGCGT GCGCCCCGGC TGCCCGAATT TCGGTCTGCA CGCCGGTGCC TGCGGCGGCT GCAAGATGCA GCATCTGCAC GTGGGCGCCC AGGTGGCCAT CAAGCAGCGC GTGCTGGAAG ACAATCTCTG GCATCTGGCC AAGGTCAAGC CCGAGACGCT GCTGCGCCCC ATCGAAGGTC CGTCCTGGGC CTACCGTTTC CGCTCGCGCC TTTCGGTGCG CTATGTGGCC AAGAAGGGCA AGGTGCTGGT GGGCTTTCAC GAGCGCAAGA GCCGCTACAT CGCCGACATG GAGACCTGCA AGATCCTGCC GCCCCATGTG GACGCCATGC TGCTGCCCAT GCGCGCGCTG ATCGCCTCCA TGGATGCGCG CGAAACCTGC CCGCAGATCG AGGTTGCCTG CGGCGATTCC GTCACGGCCC TGGTGCTGCG CCATCTGGAG CCGCTGTCCG AGAACGACCA GGCCCGTCTG CGCGCTTTCG CAGTCGAGCA CAACGTGCAG TGGTGGCTGC AGCCCAAGGG CCCGGACACC GTGCACCTCA TGGAGCAGGG AGGCGCCCAG CTCGACTACG GCCTGCCCGA TTTCGGCATC ACCATGCCGT TCAAGCCCAC GGACTTCACC CAGGTCAATC CGCACATCAA CCGCGTGCTG GTCACGCGCG CGCTGCGCCT GCTGGATGTC AAGAAGGACG AGCGCGTGAT CGACTGGTTC TGCGGTCTGG GCAACTTCAC CCTTCCCCTG GCCACGCAGG CGCGCGAGGT GCTGGGCATC GAGGGCAGCG ATACCCTGGT CAAGCGCTCC CATGAAAACT ACGCGGCCAA CAACGCACAG CGCGCAGAGG GCGACAAGCT CGCGCCCACG CGCTTTGTGG CGCGCAACCT GTTCGAGATG ACGCCCGAGA TGCTGTTCGC CGACGGCGTG GCCGGCAAGT GGCTGGTCGA TCCGCCGCGC GAAGGCGCGT TTGCGCTGTC CAAGGCCCTG GCCGACATCC ACCAGGCGCG CATCGGTGCC GAAGGCGCCG AGCCCCTGCC GGCAGGGCAT GAGGCCTGGC GCTTTCCCGA GCGCATCGTC TATGTCAGCT GCAATCCCGC CACGCTGGCG CGCGATGCCG GCCTTCTGGT GCATCTGGCC GGCTATCGCT GTGTGTCGGC AGGCGTGGTC AACATGTTCC CCCACACGGC CCACGTGGAG AGCATGGCGG TGTTCGAGCG CTGCGCAGAC TGA
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Protein sequence | MSEPRDNKIP DNLPEADIDA PALPEGWLQV LSMDMDAQGV ARKSDGKVVF IDGALPTELV SANTHRKKNN WEAASLTAIH RESSQRVRPG CPNFGLHAGA CGGCKMQHLH VGAQVAIKQR VLEDNLWHLA KVKPETLLRP IEGPSWAYRF RSRLSVRYVA KKGKVLVGFH ERKSRYIADM ETCKILPPHV DAMLLPMRAL IASMDARETC PQIEVACGDS VTALVLRHLE PLSENDQARL RAFAVEHNVQ WWLQPKGPDT VHLMEQGGAQ LDYGLPDFGI TMPFKPTDFT QVNPHINRVL VTRALRLLDV KKDERVIDWF CGLGNFTLPL ATQAREVLGI EGSDTLVKRS HENYAANNAQ RAEGDKLAPT RFVARNLFEM TPEMLFADGV AGKWLVDPPR EGAFALSKAL ADIHQARIGA EGAEPLPAGH EAWRFPERIV YVSCNPATLA RDAGLLVHLA GYRCVSAGVV NMFPHTAHVE SMAVFERCAD
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