Gene Daci_4416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4416 
Symbol 
ID5750004 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4832154 
End bp4833146 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content70% 
IMG OID641299519 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_001565432 
Protein GI160899850 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.343651 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCGCG TGAACAAGCG TCGTTTCCTG CTGGCCGGCC CTTCCCTGCT GGCCGCTGCC 
GCCCTGGCTT CCACCACCGC CGCGCGGGCT GCGGCCGACC CCAGGACCCG ATTGGTCGTC
GCCGACCAGA GCGAGCTGCT GCGCCACCTG CTGGATGCCA GCGGCGAGCG CAAGCGCCTG
GGCTTTCAGC TGGAGCTGCC CAACTTCGCG GGCGGCCCGG CCATCTTCGA GGCCATACGC
GCAGGCGCGC TGGACATTGC CTATGTGGGC GACACGCCGC CCATCCAGGC GCGCGCCGCC
GGCGTGCAGC TGCCCATCAT CGCCACCTTC ACGCGCGAGC GCGCCCAGTA CCGGCTGGTG
CAGCGCGCCG ATGCAGGCAT AGAGCGCCTG GCCGACCTGC GCGGCAAGCG CCTGAGCTAT
GTGGAAGGCT CGGGCCGCCA GGTCTTCCTG ATCGAGGCAT TGACACGCGC GGGCCTGACG
CTGGCCGACG TGAAGCTGGT CAACCTGCGC GTGGCCGAAC TCAACGACGC GCTGCGCGCC
AAGGCCGTGG ACGTGGCCGT GCTCATGGAG CCCCATGTCA CGCGCCTGGG CAAGCAGATC
GGCGCGCGGC CCGTGCCCGA TCCGCAGGAG CGCACGCTGC TGCCCGCCAC CTCGTACATC
TACGCACGGC CCGACGTGCT GGCCGACCCG GCCAAGTCCC AGGCCATCGT CGATTTCCTG
GGCGCCTTCG TGCGCGCAGG CAAGTGGAGC AATGGCCACG AGCAGGAATG GGGCCGCCAC
TACTACACGC AGTTCCAGCG CATCGATGCG GAGAGCACGG CGGCCATCCT GGCATCGCAG
TCCGACCTGC TGTTCCAGAC GGCCGCCGAG GCGCAACCCC ACCACCAGAA GCTGATCGAC
ATCCTGCACG CCGCCGGCAG CCTGCCCCAG CGGCTGGATG CGGCCGGCTC CTTCGTGTCC
ACCTACGACC GCGTGATCGT GGCCAACCGA TGA
 
Protein sequence
MERVNKRRFL LAGPSLLAAA ALASTTAARA AADPRTRLVV ADQSELLRHL LDASGERKRL 
GFQLELPNFA GGPAIFEAIR AGALDIAYVG DTPPIQARAA GVQLPIIATF TRERAQYRLV
QRADAGIERL ADLRGKRLSY VEGSGRQVFL IEALTRAGLT LADVKLVNLR VAELNDALRA
KAVDVAVLME PHVTRLGKQI GARPVPDPQE RTLLPATSYI YARPDVLADP AKSQAIVDFL
GAFVRAGKWS NGHEQEWGRH YYTQFQRIDA ESTAAILASQ SDLLFQTAAE AQPHHQKLID
ILHAAGSLPQ RLDAAGSFVS TYDRVIVANR