Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_4348 |
Symbol | |
ID | 5749936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 4760996 |
End bp | 4762558 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641299451 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_001565364 |
Protein GI | 160899782 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0382133 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGTTCCA TGCACCTCAG GGCGGACATA CGCCAGTCCC AGACGCTTTC TCCCCGCCTG CAGCTTGCGG TGCGGATGCT GCAGATGTCC TCGCTGGACT TTGCCGCCGT GGTGCGCAGC AAGCTGGAGG ACAACCCGTT CCTGGAAGAC CCGCAGGATG CGCAGTACGG CGAGTACGAA CAGGGGCTGC TCGACGGCAA GGAGCTGGGT GAAGAGGGCC GGGAAGGCGG CATGGGCAGG CTGGCCCCGG AGGCAGGCCT GGCCCCGGAC ACCGGCATGG ATGACGGCAT CGGCATGGGC ATCGGTATGG ACATGGACCG CGACCTCCCC GGCATGCAGC ACCCGCCCGA CCCGGCCGAC CACCTGCCCG GCCCCGCCAC CGAACCCGCC GACGACCGCG ACCTGTGGCT GGCCGACATG CATACGGGCG CGCGCCAGGG GGTGGATGGA GAAGGCACGG CCATGGATCT GGCCGCCTGC GAGACCACGC TGGCCATGCA CCTGCACGGC CAGCTCAATG TGATGGCGAT GACGCCACGC GACCTGTGCA TGGCCCGGGC CATCGTGGAG TCGCTGGACG ACGACGGCTA TCTGCGCACC GACCTGCAGG AGCTGGCCGG CCTGCTGGCC CTCAGCCCCG CACCTGACGC GCAGGAAATG CTCATTGCCC TGCGCCTGGT GCAATCGCTG GACCCGGCCG GCGTGGCCGC CCGCAGCGTG GGCGAATGCC TGTTGCTGCA ATGCCCGCAG ATCGGCGATG CCCGCCTGCG CCAGCTGGCC CAGGCCATGG TGCAGGACCA CATGGATGCG CTGGCCGCCC GCGACGTGCC CCGGCTGGCC CGGGCGCTGC AGGTGCCGCC CGCGCAGATC ACGCAGGCGC TGGACTGCAT ACGTCGGCTG AACCCCAGGC CGGGCTGGAA CTTCGGCTCC TCCCACGTGG ACTACATCGT TCCCGACGTG ATCGTGCGCC GGGGCCAGAA CGGCTGGAAC GTGCACCTCA ACCCCGCGGT CGTGCCGCGC GTGCGCCTGA ACCGCGTCTA CGAGCAACTG TTTCAGCGCC ACCGCCGCAG CGGCCAGAAC CAACTGGCCG ACCACCTGCA GGATGCGCGC TGGACGGTGC GCAACGTGGA GCAGCGCTTT TCCACCATCC TCGACGTGGC GCAGGCCATC GTGCGCAAGC AGCAGCTGTT CCTGGAGTTC GGCGCCATGG CCATGAAGCC GCTGGTGCTG CGCGAGATTG CCGAGGAAGT GGGCGTGCAC GAGTCCACCG TCTCGCGCGT GACCAACAAC AAATACATGG CCACGCCCAC GGGCGTTTTC GAGCTCAAGC ATTTCTTCTC GCGCCCCATG CTCAGCGCCA GCGGCAATGC CTGCTCGGCC ACGGCCATCC GCGAGCTGAT CGGCGACATC ATCGCGGCCG AGTCCGATGC CCGGCCGCTG TCGGATGTCG AAATCGCACG CCAGCTGAGT GCCCAGGGCC TGGTCGTGGC GCGCCGCACC GTCACCAAAT ACCGCCAGCT GCTGCGCATA GAACCGGCCG ACCGGCGCAG GCGCCACGCC TGA
|
Protein sequence | MGSMHLRADI RQSQTLSPRL QLAVRMLQMS SLDFAAVVRS KLEDNPFLED PQDAQYGEYE QGLLDGKELG EEGREGGMGR LAPEAGLAPD TGMDDGIGMG IGMDMDRDLP GMQHPPDPAD HLPGPATEPA DDRDLWLADM HTGARQGVDG EGTAMDLAAC ETTLAMHLHG QLNVMAMTPR DLCMARAIVE SLDDDGYLRT DLQELAGLLA LSPAPDAQEM LIALRLVQSL DPAGVAARSV GECLLLQCPQ IGDARLRQLA QAMVQDHMDA LAARDVPRLA RALQVPPAQI TQALDCIRRL NPRPGWNFGS SHVDYIVPDV IVRRGQNGWN VHLNPAVVPR VRLNRVYEQL FQRHRRSGQN QLADHLQDAR WTVRNVEQRF STILDVAQAI VRKQQLFLEF GAMAMKPLVL REIAEEVGVH ESTVSRVTNN KYMATPTGVF ELKHFFSRPM LSASGNACSA TAIRELIGDI IAAESDARPL SDVEIARQLS AQGLVVARRT VTKYRQLLRI EPADRRRRHA
|
| |