| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4331 |
|---|
| Symbol | |
|---|
| ID | 5749919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4740364 |
|---|
| End bp | 4741485 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641299434 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001565347 |
|---|
| Protein GI | 160899765 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0730184 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTC CGTTCCGCAT GCACACCGTC GTCGCCGCCC TGGGTTTGGC TGGTGCCGCC
TTGTTCTCCA CAGCGCATGC GCAAATCAAG ATCGCCATGG TGGTTCCCAC CACTGGCCCG
CTGACGCAGT ACGGCGACAT GGTCAAGGAA GGCGTGAACA CCGCCGTGGA AATGGCCAAT
GCGGCTGGCG GCGTCAATGG CAAGAAGATC GAGCTGGTGT CCGTCGATGA CGCCTGCGAA
CCCAAGCAAG GCCCCGTGGC CGCCAACCGC GTGGTCAACG CCAAGATCGG CTACGTGATC
GGCCCCGTCT GCTCGGGCGC ATCGATTGCC GCCGCCCCGA TCTACAACAA CGAAGGCGTG
GTCGTCGTGA CCCCCTCGGC CACCTCCCCG GCCCTGACCG ACGGCAAGAA CTACCACTTC
ATCTTCCGCA CCATCGGCCG CGATGACCAG CAGGGCCCGG CCGCCGCCAA GTTCATCCTG
GACAAGGCCA AGCCCAAGAA GGTTGCCGTG CTGCACGACA AGCAGTCGTA TGGCCAGGGC
ATTGCCTCCT CCGTGCGCGA CGACCTGAAG AAGGCCGGCG TGGAAGTGGC CCTGTTCGAA
GGCATCAACG CCGGCGACAG CGACTACTCC GCCGTCATCA CCAAGCTCAA GAGCGCCGGT
GTGGACTTCG TCTACTACGG CGGCTACCAC CCTGAAATGG GCCTGCTGCT GCGCCAGGCT
TCCGAGCAGG GTCTGAAGGT CCGCATGATG GGTCCCGAAG GCGTGGGCAA CCCCGAAGTC
AACGCCATCG CCGGCAACGC CGTCGAAGGC ATGCTGGTGA CCCTGCCTGC AGACTTCTCG
GCCAACCCCA AGAACGCCGC CGTGGTCAAG GCCTTCAAGG ACAAGAAGCG CAATCCCTCG
GGCGCCTTCC AGCTGACCGC CTTTGCCGCC ACGCAAGTGC TGCTGGACAG CATCAAGGCC
GTGGGCGACA GCCCCGCCAA GGTGGCTGAC CACCTGCACA AGTCCAACTT CGAGACCGTT
CTGGGCTCGG TGGGCTGGAA CAAGCAGGGC GACCTGAAGT CCTTCGACTT CCAGGTGTTC
GAATGGCACA AGGACGGCAG CAAGTCGGTC GCTGCCAAGT AA
|
|---|
| Protein sequence | MSIPFRMHTV VAALGLAGAA LFSTAHAQIK IAMVVPTTGP LTQYGDMVKE GVNTAVEMAN
AAGGVNGKKI ELVSVDDACE PKQGPVAANR VVNAKIGYVI GPVCSGASIA AAPIYNNEGV
VVVTPSATSP ALTDGKNYHF IFRTIGRDDQ QGPAAAKFIL DKAKPKKVAV LHDKQSYGQG
IASSVRDDLK KAGVEVALFE GINAGDSDYS AVITKLKSAG VDFVYYGGYH PEMGLLLRQA
SEQGLKVRMM GPEGVGNPEV NAIAGNAVEG MLVTLPADFS ANPKNAAVVK AFKDKKRNPS
GAFQLTAFAA TQVLLDSIKA VGDSPAKVAD HLHKSNFETV LGSVGWNKQG DLKSFDFQVF
EWHKDGSKSV AAK
|
|---|
| |