Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_4150 |
Symbol | |
ID | 5749738 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 4542282 |
End bp | 4544294 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641299253 |
Product | DNA topoisomerase III |
Protein accession | YP_001565166 |
Protein GI | 160899584 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0356061 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0728569 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCTGT TCTTGTGCGA GAAGCCCTCC CAGGGCAAGG ATATTGGCCG GATTCTCGGC GCGACGCAGC GCGGTGAAGG CTGCCTCAGC GGCTCCGGCG TCACGATTAC CTGGTGCATC GGCCATCTCG TAGAAGCGGC AGCACCCGAA GTCTATGACG CGGCGCTCAA GCGCTGGTCA CTGGAGCAGT TGCCCATCAT TCCCCAGCAG TGGCGGGTCG AGGTCAAACC CAAGACCGCC ACGCAATTCA AGGTCGTCAA GGCGCTTCTG GCGAAGGCGA CCCATCTCGT CATCGCCACC GATGCCGACC GCGAGGGCGA GCTGATCGCC CGCGAGATCA TCGACCTGTG CGGCTACCGT GGTCCCATCG AGCGCTTGTG GCTGTCGGCG CTCAACGATG CGTCGATCCG CACCGCGCTC GGCAAGCTGC GACCGTCGTC CGATACGCTG CCGATGTATT ACTCGGCGCT GGCGCGTTCG CGGGCAGACT GGCTCGTGGG CATGAACCTC AGCCGTCTTT TCACGCTGCT CGGGCGGCAG GCGGGCTACG ACGGCGTGCT GTCGGTCGGA CGTGTCCAGA CCCCGACCCT GAAGCTGGTC GTTGATCGCG ACCGCGAAAT CGCGGCTTTC AAGTCGGCGC CGTTCTGGGC CATCGACGTG TCTCTGTCCA CAGAGGGTCA GGCTTTCTCC GCGCAGTGGG TTGCGCCCGA CGGCTGCACC GACGACGCCG GTCGTTGCCT GCAACAGCCG GTCGCCCAGC AGGCGGCGCT GCAGATTCGC GTCGCGGACA ACACCCAGGT GGTGTCGGTC GAGACCGAGC GCGTGCGCGA AGGCCCGCCA CTGTTGTTCG ACCTGAGCAC CTTGCAGGAG GTCTGTTCCA AGCAGCTCGG GCTGGACGTG CAGGAGACAT TGCAGATCGC CCAGGCCCTG TACGAGACGC ACAAGGCCAC GACCTACCCG CGCTCGGACT CCGGCTATCT GCCCGAAAGC ATGTTCGCCG AGGTGCCCGC CGTCCTGGAC AGCCTGCTCA AGACCGATCC GTCGCTGCGC CCGATCATGA GCCAGCTCGA CCGCTCCCAG CGTTCGCGTG CATGGAACGA CGGCAAGGTC ACGGCGCACC ACGGCATCAT TCCGACGCTC GAACCCGCGA ACCTCTCTCC TCTGAGCGAG AAGGAACTGG CGGTGTACCG GCTGATCCGG GCGCATTACC TGGCGCAGTT CCTCCCGCAC CACGAGTTCG ACCGTACCGT GGCTGAGTTT TCCTGCGGCC AGCAGATGCT GGTGGCCACC GGTAAACAGG TGGTCGTCAA AGGCTGGCGT CTGGTGCTGG CCGAACCGCA AGCGGATGAG GACGGCGACG ACGCGGCGCG CAGCCAGGTG CTGCCCCCGC TGCGTGGGGG CCTGGCGTGC CAGGTGGCTG AGGTCGAGAT CAAGGCGCTC AAGACGATGC CGCCCAAGCC CTACACCCAG GGCGAACTGG TCAAGTCGAT GAAGGGCATT GCGCGCTTCG TGACCGACCC GCGCCTGAAG CAGAAGCTCA AAGACACGAC GGGCATCGGC ACCGAGGCGA CGCGGGCCAA CATCATCAGC GTGCTGATCG CCCGTGGCTA CATCGTGAAG AAGGGGCGCT CCATTCGCGC ATCGGATGCG GCGTTCACGC TGATCGACGC CGTGCCCGCA GCGATTGCAG ACCCCGGCAC GACGGCAGTG TGGGAGCAGG CGCTCGACAT GATCGAGGCG GGACAGCTCA CCCTGGACGT ATTCCTCAGC AAGCAGGCCG CCTGGATTTC GCAGTTGATC GCGCAGTACG GCAGCATGTC CCTGTCCATC AAGCTTCCCC ATGGGCCAGC ATGTCCGCAG TGCGGCGCAG CGACGCGCCA GCGCACCGGC AAGAGCGGCC CATTCTGGTC GTGCAGTCGC TACCCCGACT GCAAAGGCAC GCTGCCGGTC GAATCCGGTA CGCCCAAGCG TGGCGCTTCG CGCTCGCGTA GCAGCGGCCG CAAAGGCGCC TGA
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Protein sequence | MRLFLCEKPS QGKDIGRILG ATQRGEGCLS GSGVTITWCI GHLVEAAAPE VYDAALKRWS LEQLPIIPQQ WRVEVKPKTA TQFKVVKALL AKATHLVIAT DADREGELIA REIIDLCGYR GPIERLWLSA LNDASIRTAL GKLRPSSDTL PMYYSALARS RADWLVGMNL SRLFTLLGRQ AGYDGVLSVG RVQTPTLKLV VDRDREIAAF KSAPFWAIDV SLSTEGQAFS AQWVAPDGCT DDAGRCLQQP VAQQAALQIR VADNTQVVSV ETERVREGPP LLFDLSTLQE VCSKQLGLDV QETLQIAQAL YETHKATTYP RSDSGYLPES MFAEVPAVLD SLLKTDPSLR PIMSQLDRSQ RSRAWNDGKV TAHHGIIPTL EPANLSPLSE KELAVYRLIR AHYLAQFLPH HEFDRTVAEF SCGQQMLVAT GKQVVVKGWR LVLAEPQADE DGDDAARSQV LPPLRGGLAC QVAEVEIKAL KTMPPKPYTQ GELVKSMKGI ARFVTDPRLK QKLKDTTGIG TEATRANIIS VLIARGYIVK KGRSIRASDA AFTLIDAVPA AIADPGTTAV WEQALDMIEA GQLTLDVFLS KQAAWISQLI AQYGSMSLSI KLPHGPACPQ CGAATRQRTG KSGPFWSCSR YPDCKGTLPV ESGTPKRGAS RSRSSGRKGA
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