| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3981 |
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| Symbol | |
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| ID | 5749564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4385232 |
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| End bp | 4387805 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641299079 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001564997 |
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| Protein GI | 160899415 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0135401 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCCT CCCCTTCCGA GCACGGCACG CACAGCCCTG CCCCCATGGC AGGCGTGGCC
GCGCCAGTGC GCTGGTGGCG CAGCTGGTGG CGCAGTCTTT CCCCCACGCG CCAGGACCGC
TTCGCGGCGC TCGCCCCCCT CGCGGCCGTA CTGATGTTCA TGGCGGCCAT CGTGGCCTCC
TTCTGGTACC TGCGCATGGA GGAGATAGAC CGCGAGAAGG AAGCGCTGCA CCGCGACGTG
GAATATGCCC AGCAACGCGT GCGCCTGCGC CTGCTGGAGC GCCAGGAGCA ACTGATGCGC
ATGGCGCGCG ACATAGGCAA CCACGACCTG GGCGAATCCG ACTTCGCCAG CCGCGCCGAA
GCACTCATCA GCCAGTACCC GGAACTGCAG TCCATCACCT GGATCGATGC ACAGCGGCGC
ATCCTGGCCA GCCAGTCCGC CCCCACCGTC AGCAGCGAGC AGCTGCGCAT CCCGCGTGAA
GTGCTGCGCG CCGGAGACGC GCTGGAGGCC TACCAGCTCG CGCGCGAGAT GCAGCAACCC
ATCTACGTGC AGGGACTGGC CCACAAGGGG GAAGCCGCGC CGCTGCTGCA ACTGCATGTG
CCGCTGGCAC AGGACGGCCG CTACATCGGC GAGCTGCTGG GCGAATACTC CATCGACAGC
CTGCTGCGCT ATGGAACACC CACCGAAATC ATGGCCCGCT ACGCCATGAC CATGCTCGAC
AGCCGGGGCC AGGTGCTGGC AGGCACGCCG CTGACACCGC GCAAGCAGAC CGCCACCGAA
CTGCTGCGCT GGCGCACCGT TGCCAACGAG GACGAGGCAC CCGTCGCCCC CGTGGGCAAC
AGCCTGGTGC TGCGTGCCCA GGCCTATCGC ACCTCGCTGG GCGTGGTCGG CAGCGGCCTG
TTCTGGCTGG TGGGCACGCT CAGTGCGATG ACGGCATGGC TGCTGCTGGC CACCTGGCGC
CACACGCGCC GCCGCCAGCG CGCCCAGGAG GCCCTGGTCG CAGAGACCAA CTTCCGCCGC
GCCATGGAAA ACTCCGTGCT CACCGGCATG CGCGCGCTGG ACCTGCAAGG CCGCATCACC
TATGTGAATG CCGCCTTCTG CCAGATGACG GGCTGGAGCG AATCAGAGCT GGTCGGCCAG
ATGCCGCCCT ACTCCTACTG GCCCGACAAC GACTACGACA ACCTGCACTC CAAGCTGCGC
GAAGAGCTTT CGGGCAAGAC CATCGTCGGG GGCTTTCAGG TGCGCGTGCA GCGCAAGAAC
GGCACGCAGT TCGATGCGCG CCTGTATGTC TCGCCGCTGA TCGACGCCCA TGGCCAGCAC
ACGGGCTGGA TGTCGTCCAT GACCGACATC ACCGAGCCCA ACCGCATCCG CGAGCAACTG
TCCGCCTCCT ACGAGCGCTT CACCATCGTG CTGGAGGCGC TGGACGCCTC GGTGTCCGTC
GCCCCGCTGG GCAGCGCCGA GCTGCTGTTC GCCAACAAGC TGTACCGGCA GTGGTTCGGC
TCGCAGACCG ATGGCCACCT GCAGCTCGTC GCCCAGGCCG GCGTGCTGCC CGTGCGCTCG
CAGCCGCAAG GCATGGACGA CGAGGACGGC CTCATGGGCC TGCCCACCGA CTCGCTGACC
AGCGCACGCA GCGAAAACGC CGAGATCTAC CTGCCGGAAC TGGGCAAGTG GCTGGAAGTG
CGATCGCGTT ACCTGAGTTG GGTGGACGGC CGCCTGGCCC AGATGGTGAT CGCCACCGAC
ATCACGCCGC GCCGCCTGGC CGAGGAGCAG GCCGATCGCC AGGCCGAGCA CGCCCAGTCC
GTCAGCCGCC TGATCACCAT GGGCGAGATG GCCTCCAGCG TCGCCCATGA GCTCAACCAG
CCGCTGACCG CCATCAGCAA CTACTGCAGC GGCATGCTCA CCCGGCTTGA AAAGGGCACG
CTGACCGAAG AGCAGATGAA ATTCGCGCTG GAGAAAACCG CCCACCAGGC GCAGCGCGCG
GGACAGATCA TTTTGCGCAT ACGCTCCTTC GTCAAGCGCA GCGAGCCCAA CCGCACACTG
GCCCAGGTCA CCGACATGGT CAGCGAGGCC GTGGAACTGG CCGGGATCGA GCTGCGCCGC
CGCAATGTGC AGCTGACCTA CCACGTGGCC GAGCGCATGC CGGCCATCAT GGCCGACACC
ATCCTCATCG AGCAGGTGCT GGTCAACCTC ATGAAGAACG GCGCCGAATC CATCGAGCAG
TCGGGCCGCC CCAGCCACCA GCGCAATGTG GAGCTGCGCG TGGTGCCGCG CACCATCGAG
GACCAGCGCG TCATCGAATT CAACGTGCAG GACACCGGCA AGGGCCTGCC GCCGGAGGTG
CTGGAACGCC TCTTCGAGGC CTTCTTCACT ACCAAGAGCG AAGGCATGGG CATGGGGCTG
AATCTGTGCC GCAGCATTGT CGAGTCCCAC CAGGGCCGGA TGCGTGCCGA GAACCTCTAC
AATGGTTCCG AGGTTGTCGG CTGCCGGTTT TCATTCTGGC TGCCGCTGGC CCCGCCGGGC
GACGCGACAA CGCCGGCAGC GACCATTGAA CCCACAACAA GGACGATTGC ATGA
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| Protein sequence | MQSSPSEHGT HSPAPMAGVA APVRWWRSWW RSLSPTRQDR FAALAPLAAV LMFMAAIVAS
FWYLRMEEID REKEALHRDV EYAQQRVRLR LLERQEQLMR MARDIGNHDL GESDFASRAE
ALISQYPELQ SITWIDAQRR ILASQSAPTV SSEQLRIPRE VLRAGDALEA YQLAREMQQP
IYVQGLAHKG EAAPLLQLHV PLAQDGRYIG ELLGEYSIDS LLRYGTPTEI MARYAMTMLD
SRGQVLAGTP LTPRKQTATE LLRWRTVANE DEAPVAPVGN SLVLRAQAYR TSLGVVGSGL
FWLVGTLSAM TAWLLLATWR HTRRRQRAQE ALVAETNFRR AMENSVLTGM RALDLQGRIT
YVNAAFCQMT GWSESELVGQ MPPYSYWPDN DYDNLHSKLR EELSGKTIVG GFQVRVQRKN
GTQFDARLYV SPLIDAHGQH TGWMSSMTDI TEPNRIREQL SASYERFTIV LEALDASVSV
APLGSAELLF ANKLYRQWFG SQTDGHLQLV AQAGVLPVRS QPQGMDDEDG LMGLPTDSLT
SARSENAEIY LPELGKWLEV RSRYLSWVDG RLAQMVIATD ITPRRLAEEQ ADRQAEHAQS
VSRLITMGEM ASSVAHELNQ PLTAISNYCS GMLTRLEKGT LTEEQMKFAL EKTAHQAQRA
GQIILRIRSF VKRSEPNRTL AQVTDMVSEA VELAGIELRR RNVQLTYHVA ERMPAIMADT
ILIEQVLVNL MKNGAESIEQ SGRPSHQRNV ELRVVPRTIE DQRVIEFNVQ DTGKGLPPEV
LERLFEAFFT TKSEGMGMGL NLCRSIVESH QGRMRAENLY NGSEVVGCRF SFWLPLAPPG
DATTPAATIE PTTRTIA
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