| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3979 |
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| Symbol | |
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| ID | 5749562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4380483 |
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| End bp | 4382174 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641299077 |
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| Product | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase |
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| Protein accession | YP_001564995 |
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| Protein GI | 160899413 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG0511] Biotin carboxyl carrier protein |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.057463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00853533 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCATTGG TAGAAATTCA AGTCCCCGAT ATCGGTGATT TCGACGAAGT TGCTGTGATC
GAAGTGCTGG TCAAGGCCGG CGATCAGATC AAGGCCGAGC AATCGCTGAT CACGGTGGAG
TCCGACAAGG CCTCCATGGA GATCCCCTCC AGCCACGCTG GCGTGCTCAA GGAGCTGCGC
GTCAACATGG GCGACAAGGT CAAGCAGGGC AGCATCATTG CCGTGGTCGA GTCGGCGGAA
GCCGCTGCCC CGGCACCTGC AGCCGCCGCA CCGGCCCCCG CCGCTGCAGC CCCGGCCCCG
GTGGCTGCGC CTGCACCGGC CGCTGCTCCT GCTGCCGCGC CTGCGGCCTC GGGCGCCGCC
ACGCAGATCG ACATCAAGAT TCCCGACATT GGCGACTTCA AGGACGTGGC CGTGATCGAG
ATGCTGGTCA AGGTCGGCGA CACCGTGACG GCCGAGCAAT CGCTGTTCAC CGTCGAATCC
GACAAGGCCT CGATGGAAAT CCCGTCGCCA GCGGCCGGCA CCATCACGGC GCTGACGCTC
AAGATCGGTG ACACGGTCAA CGTGGGCGAC GTGGTCGGCC AGATGAGCGT GCAGGGCGCT
GCCGCGCCTG CAGCCCAGGC TGCGGCCCCG GCACCTGCTG CTGCAGCCCC TGCACCGGCA
ACTGCTGCCC CGGCCGCTGC AGCTCCGGTG GCTGCCGCTG CAGCATCGGC TCCCGCCGCT
GCGCCTGCGC ACAACCCCAC CGTGGCACCC ACGGGCAAGC TGCCCCATGC ATCGCCCTCG
GTACGCAAGT TCGCCCGCGA GCTGGGTGTG CCGCTGGACG AGGTCAAGGG CTCGGGCAAC
AAGGGCCGCA TCACGGCCGA CGACATCCAG GCTTTCACCA AGTCCGTCAT GGCGGGTACC
GTGCAGACCA AGGCCCAGGC CGCGACCGCT CCCAAGGGTG GCTCCGGCGG CGGCGCAGGT
CTGGACCTGC TGCCCTGGCC CAAGGTCGAC TTCGCCAAGT TCGGCCCGGT CGAGCGCAAG
GACCTGTCGC GCATCAAGAA GATCAGCGGC GCCAACCTGT CGCGCAACTG GGTCATGATC
CCGCACGTCA CCAACAATGA CGAGGCCGAC ATCACCGACC TGGAAGCCTT CCGTGTCTCC
ACCAACAAGG AGAACGAGAA GAGCGGCGTC AAGGTGACCA TGCTGGCCTT CGTGATCAAG
GCGGTGGTTG CGGCCCTCAA GAAGTTCCCC GAGTTCAATG CCTCGCTGGA CGGCGACACC
CTGGTCTACA AGCAGTACTT CCACGTCGGC TTTGCGGCCG ACACGCCCAA CGGCCTGGTG
GTCCCCGTGC TGCGCGATGC CGACAAGAAG GGCATCCTGC AGATCAGCCA GGAAATGGGC
GAACTGGCCA AGAAGGCCCG CGACGGCAAG CTCGGCGCTG CCGACATGCA GGGCGGCTGC
TTCTCGATCT CGTCGCTGGG CGGCATCGGT GGCACGAACT TCACTCCCAT CATCAACGCT
CCTGAAGTGG CCATCCTCGG CCTGTCCAAG GGCCAGATGA AGCCGGTGTG GGATGGCAAG
CAATTCGTGC CGCGCCTGAC GCTGCCGCTG TCGCTGTCCT ATGACCACCG TGTCATCGAC
GGTGCCTCGG CCGCGCGCTT CAATGCCTTC CTGGGCCAAG TGCTGGCGGA CTACCGCCGC
ATCCTGCTGT AA
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| Protein sequence | MALVEIQVPD IGDFDEVAVI EVLVKAGDQI KAEQSLITVE SDKASMEIPS SHAGVLKELR
VNMGDKVKQG SIIAVVESAE AAAPAPAAAA PAPAAAAPAP VAAPAPAAAP AAAPAASGAA
TQIDIKIPDI GDFKDVAVIE MLVKVGDTVT AEQSLFTVES DKASMEIPSP AAGTITALTL
KIGDTVNVGD VVGQMSVQGA AAPAAQAAAP APAAAAPAPA TAAPAAAAPV AAAAASAPAA
APAHNPTVAP TGKLPHASPS VRKFARELGV PLDEVKGSGN KGRITADDIQ AFTKSVMAGT
VQTKAQAATA PKGGSGGGAG LDLLPWPKVD FAKFGPVERK DLSRIKKISG ANLSRNWVMI
PHVTNNDEAD ITDLEAFRVS TNKENEKSGV KVTMLAFVIK AVVAALKKFP EFNASLDGDT
LVYKQYFHVG FAADTPNGLV VPVLRDADKK GILQISQEMG ELAKKARDGK LGAADMQGGC
FSISSLGGIG GTNFTPIINA PEVAILGLSK GQMKPVWDGK QFVPRLTLPL SLSYDHRVID
GASAARFNAF LGQVLADYRR ILL
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