Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3859 |
Symbol | |
ID | 5749442 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 4251501 |
End bp | 4253375 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641298957 |
Product | type VI secretion protein |
Protein accession | YP_001564875 |
Protein GI | 160899293 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.353527 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCCC GCCTCGTCGA GTACTACAAC CGCGAACTGG CCTATCTGCG CGAGCTGGGC GCCGAGTTCG CCGCCGCCTT CCCCAAGGTG GCGGGCCGCC TTTCCCTGCA CGACACCGAT GTGGCCGACC CCTATGTGGA GCGCCTGCTG GAAGGCTTCA GCTTTCTGAG CGCGCGCATC CAGCTGAAGA TGGATGCGGA GTTTCCGCGC CTGTCCCAGC GCATGATGGA GATGGTCTGC CCCCACTACC TGGCGCCCAC GCCATCCATG GTGGTGGTCC AGCTCAAGCC CAGCGCCAAG GAAGGCAACC TCGTGGACGG CTTCACCCTG CCCTCTGGCA GCGTGCTGCG CACCCACAAG TCACAGGAAG AGCAGACCAT CTGCGAATTC CGCACCGGCG GGCCGCTGAC GCTGTGGCCG CTGGAGATAC GCCAGGCGCG CCTGGGCGGC CCGGCGCTGG ACCTGCCCCA TGCCCTGGTA CCCCAGCTGG GCGAGGCCGG CGGCCACCTG CGCCTGCAGC TGGCCACGCT GGACGCCTCG CAGTGCATGC AGCTGGCGAT GGACCAGCTG TGGGTCTACA TCCATGCGGG CGATGTCGTC GCCTCCCACC TGCAGGAACT CATCCACACG CAGACGCTGG CCATCGTTGT CCACCACCCG CAGGACCCGC GCCAGGTCTG GGACGTGCTG CAGCCCGATG CACTGCGCGC CGAAGGCCAT GACAGCGAGC AGGCGCTGAT TCCCTATTCG CACCGCGCCT TCCAGGGCCA CCGTCTGCTG CACGAGTACT TTGCGTTTCC CGCACGGCAG CGGTTCTTCT CGATCAACGG CCTGTCGCGC AGCATGCGCC GCATTGCCCA TGACGGCGTG GGCATCACCG TGCTGCTGCG CCGCGCCGCG CCCACGCTGG AGCCGCAGAT CGACGCGGCC AAGCTGCTGA TGCACTGCAT TCCGGCCATC AACCTGTTCG AGTACACGGC GGACCGCCTG CATGTGGCCT CCAACGTGCA CGAGTACCAC GTCATTCCCG ACCGCACGCG GCCGCTGGAC TTCGAGGTCT ACGGCGTGCA GGCCGTCACC GGCCACCACG AAGGCAAGAC CCAGGACCGC GAATTCGCGC CGCTGTACGC ATCCACGCAC GGCCTGCACT CCACCGAGCA GGCCTACTTC ACCACGCGGC GCGAGCCCCG GCTGTTTTCC GAGCGCAGCC TGCGCAGCGG CCCGCGCACG CAGTACCTGG GCTCGGAAGT CTTCATCTCC CTGGTGGACC AGCGCGAGGC CCCGTTCTCC GACGACCTCA AGCAGCTGTC CATGCACACC CTGTGCACCA ACCGCGACCT GCCCCTGCTC ATGCGCGTCA ACCAGCCGGG CGGCGACTTT GCGCTGCAGG AATCGGCGCC CGTGGAATGG GCCCGCGCCA TCGCCGGCCC CAGCGCGCCC ATCCCCGCCG TGGCCGACGG AGGCCTGACC TGGCGATTGA TCTCCCACCT GAGCCTGAAC TACCTGGCCA TGACCGATCT GTCCGACGAG GAAGGCGCGG CCACGCTGCA GGAGCTGCTG CGCCTGTACC TGGACCTGGG CAACCACCAG CTGGCCGGGC AGATCGCCGC CATCCAGGGC ATGCGCATCG AACCCATCAC GCGCCGCCTG CCCCAGCACC GCCAGCTGGT CTACGGCCGC GGCGTGGGCG TACACCTGAG CGTGGACGAG CCGGCCATGG CTGGCGTCAG CCCCTGGCCC CTGTCCAATG TGCTGGAGCG ATTCTTCGCC CGCCATGTGG GCGTCAACAG CTTCACCGAG CTGCAGCTGC ACTCGCGCCA GCGCGGTCCC GTCGCGCGCT GGACTCCGCG CCCCGGACAA AGGCCCGGCA TATGA
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Protein sequence | MNPRLVEYYN RELAYLRELG AEFAAAFPKV AGRLSLHDTD VADPYVERLL EGFSFLSARI QLKMDAEFPR LSQRMMEMVC PHYLAPTPSM VVVQLKPSAK EGNLVDGFTL PSGSVLRTHK SQEEQTICEF RTGGPLTLWP LEIRQARLGG PALDLPHALV PQLGEAGGHL RLQLATLDAS QCMQLAMDQL WVYIHAGDVV ASHLQELIHT QTLAIVVHHP QDPRQVWDVL QPDALRAEGH DSEQALIPYS HRAFQGHRLL HEYFAFPARQ RFFSINGLSR SMRRIAHDGV GITVLLRRAA PTLEPQIDAA KLLMHCIPAI NLFEYTADRL HVASNVHEYH VIPDRTRPLD FEVYGVQAVT GHHEGKTQDR EFAPLYASTH GLHSTEQAYF TTRREPRLFS ERSLRSGPRT QYLGSEVFIS LVDQREAPFS DDLKQLSMHT LCTNRDLPLL MRVNQPGGDF ALQESAPVEW ARAIAGPSAP IPAVADGGLT WRLISHLSLN YLAMTDLSDE EGAATLQELL RLYLDLGNHQ LAGQIAAIQG MRIEPITRRL PQHRQLVYGR GVGVHLSVDE PAMAGVSPWP LSNVLERFFA RHVGVNSFTE LQLHSRQRGP VARWTPRPGQ RPGI
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