Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3845 |
Symbol | |
ID | 5749428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 4237714 |
End bp | 4239045 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641298943 |
Product | hypothetical protein |
Protein accession | YP_001564861 |
Protein GI | 160899279 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00641884 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.766287 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAGTT CCAACATCAG CCACCAAATG CCCTGGGGCG GCGACGCCGA CACGGGCCGT GCCGAAGGCG CGGCCAGCGC CGCGCCCGCG CCTGCCGGCC AGGAGCCGCT GCGCTCCAAC CTGCCCGACG TGGTCAGCGG CGGCAACCCG CTGGTGGCCG CCGCCAACCG GCTGCTGAAC CTCATCCCCC AGATCCGCGC CATGGTCACC AACGAGGACC CGCGCGCGCT GCAACAACTG CTGCTCGAGC ACATCCGCGA ATTCGAGCAG CGCGCAGGCG CCAGCGGCGT GCCCATGGAA ACCATCATCG GTGCACGCTA CTGCATCTGC ACGGTGCTGG ACGAAACCGC CGCCCAGACG CCCTGGGGCA GTGCCGGCGT CTGGCCCAAG CACAGCCTGC TGGTCGCCCT GCACAACGAA ACCTGGGGCG GCGAGAAGTT CTTTCAGCTG CTGGCCCGCC TGGTGCAGAC GCCGCACCAG CACATCGACC TGATCGAGCT GCTGTACTAC TGCGTGATGC TGGGCTTTGA AGGCCGCTAC CGCGTGATCG ACAACGGCCG CGCCCAGCTG GAGACGCTGA AGGCGCGCCT GCTGCAGCTC ATCGAATCGA CGCGCGGCGA CCGCAGCAGC CTGCTGTCCG TGCACTGGCG TGGCGTGCAG CGCCTGGCCT CGCCGCCCTG GGCCATGGTG CCGCTGTGGG TGGCGGCTGC AATCACCTTG CTGCTGGCGT TCTTCATCTA CCTGTGGTTC AGCTACCGGC TGTCCAACAG TTCGGACGAC CTGTTCGCCG CCATCAACGA GATCCGCTTC CCGCGCACCT CGGCGGCCGC CACCGTCGCC ACGCTCAAGC CGCGGCTGCG CCAGTTCCTG GAGCCCGAGA TCCGCGAAGG CCTGGTCAGC GTGCGCGACG AGGCCGACCG CAGCACCGTG ATCCTGCGCG GCGACGGCCT GTTCGACCCG GCCGCCACCG TCGTGAAGCC CCGCTACGTG CAGGTCATCC ACCGCGTGGC AGCGGCCCTG GACGAAGTGC CGGGCAAGGT CGTCGTCAAC GGCTACACCG ACAACCTGCC CATACGCACG GCGCGCTTCC CGTCCAACTG GAACCTGTCG CAGGAACGTG CCCAGGCCGT GTCCCAGATG CTGGGCGGCT CGCTGCGCGA CCGCCAGCGC CTGCATGCCG AGGGCCGTGC CGACAGCGAC CCCGTCGCCC CCAACAACAC GGCAGAAGGC CGGGCGCTGA ACCGGCGGGT GGAAATCGTC CTGCTGGTCG CGCCCCAGCA ACGTGACCAG CAACTGCAGG CCCTGCCTGC CGCACCCGAG ACCAGGAACT GA
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Protein sequence | MNSSNISHQM PWGGDADTGR AEGAASAAPA PAGQEPLRSN LPDVVSGGNP LVAAANRLLN LIPQIRAMVT NEDPRALQQL LLEHIREFEQ RAGASGVPME TIIGARYCIC TVLDETAAQT PWGSAGVWPK HSLLVALHNE TWGGEKFFQL LARLVQTPHQ HIDLIELLYY CVMLGFEGRY RVIDNGRAQL ETLKARLLQL IESTRGDRSS LLSVHWRGVQ RLASPPWAMV PLWVAAAITL LLAFFIYLWF SYRLSNSSDD LFAAINEIRF PRTSAAATVA TLKPRLRQFL EPEIREGLVS VRDEADRSTV ILRGDGLFDP AATVVKPRYV QVIHRVAAAL DEVPGKVVVN GYTDNLPIRT ARFPSNWNLS QERAQAVSQM LGGSLRDRQR LHAEGRADSD PVAPNNTAEG RALNRRVEIV LLVAPQQRDQ QLQALPAAPE TRN
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