| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3661 |
|---|
| Symbol | |
|---|
| ID | 5749244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4019792 |
|---|
| End bp | 4021054 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641298760 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_001564678 |
|---|
| Protein GI | 160899096 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.158813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCT TCCAGCACAT CCAGGTGCCG GCCGAGGGCC AGAAGATCAC TGTCAACGCC
GACATGTCGT TGAACGTGCC AGACCAGCCC ATCATTCCTT TCATTGAAGG CGACGGCACC
GGCGTGGACA TCACGCCAGT GATGATCAAG GTGGTGGATG CCGCCGTGGC CAGGGCCTAT
GGCGGCAAGC GCAAGATCCA GTGGATGGAG GTCTTCGCGG GCGAGAAATC CACGCGCATC
TACGGCCCCG ATGTCTGGCT GCCCGAGGAA ACCATGCAGG CCCTGCGCGA GTACGTGGTC
TCCATCAAGG GCCCGCTGAC CACGCCCGTG GGCGGCGGCA TCCGCTCGCT GAACGTGGCG
CTGCGCCAGG AGCTGGACCT CTACGTCTGC CTGCGCCCCG TGCAGTACTT CAAGGGCGTG
CCCTCGCCGC TGAAGGAGCC CGAGAAGACC AACATGGTCA TCTTTCGCGA GAACTCCGAG
GACATCTACG CGGGCATCGA GTACGAGGCC CGCAGCGACA ACGCCAAGAA GCTCATCGAC
TTCCTGGTCA AGGAAATGGG CGTCAAGAAG ATCCGCTTCC CCGAGACCTC GGGCATCGGC
GTCAAGCCCG TGTCCATCGA GGGCACGGAG CGCCTGGTGC GCAAGGCCAT CCAGTACGCG
ATCGACAATG ACAAGCCCAG CGTGACCCTG GTCCACAAGG GCAACATCAT GAAGTTCACC
GAAGGGGGCT TCCGCGACTG GGGCTACGCG CTGGCCGCGC GCGAGTTCGG CGCCCAGCCC
ATCGACGGCG GACCCTGGCT CAAGTTCAAG AACCCGCGCA CGGGCCGCGA CATCGTCATC
AAGGACTCCA TTGCCGACGC CTTCCTGCAG CAGATCCTGC TGCGCCCGGC CGAGTATTCG
GTGGTGGCCA CGCTCAACCT CAACGGCGAC TACATCTCGG ACGCGCTGGC GGCCCAGGTC
GGCGGCATCG GCATTGCGCC CGGCGCCAAC ATGTCCGACT CCGTGGCCTG CTTCGAGGCC
ACGCACGGCA CGGCCCCCAA GTACGCTGGC AAGGACTATG TGAACCCGGG CTCCGAAATC
CTCTCGGCCG AGATGATGCT GCGCCACATG GGCTGGCGCG AGGCGGCCGA CCTGGTCATC
AGCGCGCTGG AAAAGGCCAT CCAGAGCAAG CAGGTGACCT ACGACTTCGC CCGCCTTATG
GACGGCGCCA CCCAGGTGTC GTGCTCCGGC TTTGGCGAGG TGATGATCTC CAAGATGGAT
TGA
|
|---|
| Protein sequence | MNRFQHIQVP AEGQKITVNA DMSLNVPDQP IIPFIEGDGT GVDITPVMIK VVDAAVARAY
GGKRKIQWME VFAGEKSTRI YGPDVWLPEE TMQALREYVV SIKGPLTTPV GGGIRSLNVA
LRQELDLYVC LRPVQYFKGV PSPLKEPEKT NMVIFRENSE DIYAGIEYEA RSDNAKKLID
FLVKEMGVKK IRFPETSGIG VKPVSIEGTE RLVRKAIQYA IDNDKPSVTL VHKGNIMKFT
EGGFRDWGYA LAAREFGAQP IDGGPWLKFK NPRTGRDIVI KDSIADAFLQ QILLRPAEYS
VVATLNLNGD YISDALAAQV GGIGIAPGAN MSDSVACFEA THGTAPKYAG KDYVNPGSEI
LSAEMMLRHM GWREAADLVI SALEKAIQSK QVTYDFARLM DGATQVSCSG FGEVMISKMD
|
|---|
| |