| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3616 |
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| Symbol | dapD |
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| ID | 5749200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3978562 |
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| End bp | 3979386 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641298717 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001564635 |
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| Protein GI | 160899053 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0280475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.136691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAAC AGCTGCAATC CATCATCGAC ACCGCCTGGG ACAACCGTGC CAGCCTCTCC
CCCGCTGCCG CCCCCAAGGA AGTGACCGAG GCCGTGGACC ACGTGATCGA AGCCCTGAAC
AACGGCCAGC TGCGCGTGGC CACGCGCGAA GGCGTGGGCC AGTGGACCGT GCACCAGTGG
ATCAAGAAGG CCGTGCTGCT GTCCTTCCGC CTCAAGGACA ACGTGCTGAT GCAGTCCGGC
GACCTGAACT TCTTCGACAA GGTCCCCACC AAGTTCGCCG GCATGACCGA GGCCGAGATC
GCCGCCACCG GCGTGCGCGT GGTGCCCCCG GCCGTGGCCC GCCGCGGCAG CTTCGTGGCC
AAGGGCGCGA TCCTGATGCC TTCCTACGTG AACATCGGCG CCTATGTGGA CGAAGGCACC
ATGGTTGACA CCTGGGCCAC CGTGGGCTCC TGCGCCCAGG TCGGCAAGAA CGTGCACCTG
TCCGGCGGCG TGGGCCTGGG CGGCGTGCTG GAGCCGCTGC AGGCCAACCC GACCATCATC
GAGGACAACT GCTTCATCGG CGCGCGTTCC GAAATCGTCG AAGGCGTGAT CGTGGAAGAG
AACTCCGTGA TCTCCATGGG CGTGTACATC GGCCAGTCCA CCCCCATCTA TGACCGTGCG
ACCGGCGAGA CCAGCTATGG CCGCGTGCCT GCCGGCTCGG TGGTGGTGTC GGGCAACCTG
CCCAAGGACA ACGGCCGCTA CAGCATGTAC GCCGCCATCA TCGTCAAGAA GGTCGATGCC
AAGACACGCT CCACCACGAG CCTGAACGAC CTGCTGCGCG ATTGA
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| Protein sequence | MTQQLQSIID TAWDNRASLS PAAAPKEVTE AVDHVIEALN NGQLRVATRE GVGQWTVHQW
IKKAVLLSFR LKDNVLMQSG DLNFFDKVPT KFAGMTEAEI AATGVRVVPP AVARRGSFVA
KGAILMPSYV NIGAYVDEGT MVDTWATVGS CAQVGKNVHL SGGVGLGGVL EPLQANPTII
EDNCFIGARS EIVEGVIVEE NSVISMGVYI GQSTPIYDRA TGETSYGRVP AGSVVVSGNL
PKDNGRYSMY AAIIVKKVDA KTRSTTSLND LLRD
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