| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3589 |
|---|
| Symbol | |
|---|
| ID | 5749173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3939289 |
|---|
| End bp | 3942651 |
|---|
| Gene Length | 3363 bp |
|---|
| Protein Length | 1120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641298690 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001564608 |
|---|
| Protein GI | 160899026 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.986808 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.020042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTGG CAACGAGTGG TTCCGTGCTC CTGGACCGAT TCCCCCGTGA CTGCCTATTC
AGCCTTAGCC GCTCCATGTC AGCTTTTGCC CAGCGCACGC TTGTAGCCAT CCGGACCGCC
TGGCCAGCCG CCACCGTCAT GGCGGTGGGC ATGTGCCTGA GCGCCGCGCT CGCCTTGCAG
CAGCAGAGGG CGCTGGAGCG CATCGATCTG CAGCGCCATA CGCAACAGGC TCAGTCTGCC
CGCCAGGCGC TGGAGATGCG CCTGGATGCC TATGCCGTCA TGGTCCAGCA TGTGGCCAAC
CAGCTGGCCG CCTCTCCCGA GATGGGGCAG CAGGCCTTCG CGCGCATTGC GCAGGCGCTG
CGCATACAGA TACAGCCCGG CATGCAGGCG CTGACCTTTA CGCGGGCCGC AACGGAGCGC
GGACAGGCCA GCCAGGATCC GTCGGCCTCG TTCAGGCCCG ATCCCCACTA TTTCTTCATC
GACTATCTCT GGCCGGTGGA AGGCAATGAA TCCATCGCCG GCCTGGACAT GCACGACCGC
CCCAGTCTCA TGGCCAGCAT GCTGCGCAGC CGGGACAGCG CGGCCGCCGT GGTCTCGGCG
CCGTTTGCCA TGAAGCAGCC CGGCGAGCAT GCCACCGCCG TGCTGGTGCG CGCGCCCGTC
TTTGCCCTTG CGGACCACCA GTCTCCGGAT GGCGCGGCCG CGCATCCGCT GTTCCTGGGA
ACGGCCGACG TCAGCATTCG TGTGCATGAT CTGGTGCAGG ACCTGCATGA GCGCGGCTTC
CTGGGCCGGC TAGCGCTGGC CATGCATGAC GCAGGCCCGG TCTCGCCCCT GCCGCCGGCC
GGCGTATCGC CGCTGCCGCT GTATCTGGGT GCTGCCTGGC CCGAGCGCGG GCAGGAAGCG
GTAGGCCTGG GCGACACCGG CCAGGTGGTG CTGGAGCAGA CGCTGCAGGC CCAGGACCGG
CTGTGGCGGC TGAACTTCAT TCCCGTGAGC ACGGCCCTGT CCTGGACCGA GCGCGCCCAG
CCCCTGGTGC TGTTTGCGCT GGGCATGCTG GTGTCAGTCC TGCTGGCCTC GCTGGCGGCA
GCCTGGTGGC GACGCCATCC GTCCAGCTGG GCGCAGCTGC GTGCCTCTTC CCGCAGCATG
CGCGAGAGCG ATGCCCGCTT TCAGGCACTG TTCGAGCAGG CCGCCGTGGG CGTGGTGCAG
ATCGACGCGG CCAACGGCAA TGTCCTGCAT GTGAACCGCA GGTATTGCGA CATCACCGGC
CACGAGGCAC AGCAGCTGTG CCAGCGCCCC CTGCTGGCCC TGGTGGCCGC CGAAACGGTG
GAGGGCGACA GGCTGCTGCT GCAGGAACTG GCTGCGGGCC AGCGCCGCGC CCTGCAGATC
GAGCGGCAGC TGCGGCGCAG CGACGGCAGC CTGGTCTGGG TGGAACTGCA CATCTCCGCG
CTGGGCCACG GCCCATCGCT GCGGCTGATG GCCCTGGTGC AGGACATCAG CGCGCGCCGC
CACTTGCAGC AAATGCAACG CGACGGATCG CGCCACCTGC GCATGGTCAT TCAGCGCCTG
CCCCTGGGCC TGGCCATGCT GCAGGAGGAT GGCCGCTTCG CCTACTGGAA CGAGGAATTC
ATGCGCCTGG CAGGCCACGG CGCCACGGCC GGCATGGATG GCGACGGCTG GTGGCGCAAC
ATGTGCCCGG ATGAAGCCCG CCGCCAGCGC ATGCAGCGCC GCTTCGAAGC CGCGCAGGCG
CGGGCGCGCG TTGCCCAAAG CCCCCATGGC AGCGAGTCCG ACAGCTGCGG CACCCTCAAC
TCCGAGGAGT ACCAGCTCAT AGGCAGCGAC GGCTGCGCGC GCTCCGTATC CATCGGCGGC
ATGCTGCTGG ACGAGGGCTG CCTGCTGATC CTGCAGGACC AGAGCCAGCG CAAGACCGCC
GAAGAGGAAA TTCGCCGCCT GGCCTTCTAC GATGCGCTCA CCGGCCTGCC CAACCGCCGC
CTGCTGGTGG ACCGGCTGCA GCAGGCGCTG GCCTCCAGCC GCCGTCGCGG GCGCTGTGGC
GCCGTCATGC TGCTGGACGT GGACAACTTC AAGGCCTTCA ACGACAGCCT GGGGCTGGAA
CTGGGCGACG TGCTGCTGCG CATGATTGCC GAGCGACTGG CCCAGTCCCT GGGCCGCGAG
GCCACGCTGG CCCGCCACAG CGGCGATGAC TTCGTCGTGC TGCTGGAGGA TCTGGGCAAG
GACTCCATGC ACGCCGCCTC CAAGCTCGAA GGCGAGGTCC AGCGCATGCG TTCGCTGCTG
CTGCAACCGT TGCAACTGAG TGGCCAGTCC TGCCACATCA CGCTGAGCAT AGGCGCCAGC
CTGTTCGGCG AGCAGGAACT CAGTGCCGAC GAGGTGCTGC GCCGTGCCGA GATGGCCATG
TACCAGGCCA AGGGCATGGG GCGCAACACG CTGCAGTTCT TCGATCCGCA ACTGCAGGCC
GTGCTGAGAT CGCGCACGGC CATGGAGCAG GAAATGCGCG AGGGTCTGGT GCGCTCGCAA
TTCGTCCTGT ACTACCAGCC GCAGGTGGCG AACGGGCGCA TCGTCGGCGC CGAGGGCCTG
CTGCGCTGGA ATCACCCGCG CGAAGGGCTG GTGCCTCCGT CGCTCTTCGT CTCGCTGGCC
GAGGAAACGG GCCTGATCCA GCAACTGGGC GAATGGGTGC TGGGCGAGGC CTGCCGGCAA
CTGGCGCAAT GGGCGGCGGA GCCGGACATG GCCTGCCTGA TGCTGGCCGT CAACGTCAGC
CCGCGCCAGT TCCACCAGGC GCGCTTCGTG GAGCAGGTGC TGCAGGCGCT CAAGGAGCAC
GGTGCCAACC CGCGCCTGCT CAAGCTGGAG CTGACCGAAA GCCTGCTGCT GGCCGACGTG
GACGACACGG CGGCCAAGAT GGCCACGCTC AAGGCACACG GCGTGGGGTT CTCGCTGGAC
GACTTCGGCA CCGGCTACTC CTCGCTGGCC TATCTCAAGC GCCTGCCGCT GGACCAGCTC
AAGATCGACC GCAGCTTCGT GCGCGACGTG CTCAGCGACC CCAACGACGC GGCCATTGCG
CGCACCATCG TCGCCCTGGG CACCAGCCTG GGCCTGCAGG TCATCGCCGA GGGTGTGGAG
ACCGAGGCGC AGCGCCAGTT CCTCGAAGAC CAGCACTGCC ATGCCTGGCA GGGCTACCTG
CTCAGCCCGC CCGTGCCCGT GCGCAGCTTC GAGGCACTGG TGCGCCAGGC CATCGTGTCG
CGCCCTCCGG CCCTGAGCCC GGCGAACCTG CCGCAGCAGG CGCAGGAGGC GCAGGACCGG
CCCCAGGTGG TGGAGTGCAC GGATGGCAGC GGGGTGCCGG ACGCCCCCTC AAACCATTCT
TGA
|
|---|
| Protein sequence | MGLATSGSVL LDRFPRDCLF SLSRSMSAFA QRTLVAIRTA WPAATVMAVG MCLSAALALQ
QQRALERIDL QRHTQQAQSA RQALEMRLDA YAVMVQHVAN QLAASPEMGQ QAFARIAQAL
RIQIQPGMQA LTFTRAATER GQASQDPSAS FRPDPHYFFI DYLWPVEGNE SIAGLDMHDR
PSLMASMLRS RDSAAAVVSA PFAMKQPGEH ATAVLVRAPV FALADHQSPD GAAAHPLFLG
TADVSIRVHD LVQDLHERGF LGRLALAMHD AGPVSPLPPA GVSPLPLYLG AAWPERGQEA
VGLGDTGQVV LEQTLQAQDR LWRLNFIPVS TALSWTERAQ PLVLFALGML VSVLLASLAA
AWWRRHPSSW AQLRASSRSM RESDARFQAL FEQAAVGVVQ IDAANGNVLH VNRRYCDITG
HEAQQLCQRP LLALVAAETV EGDRLLLQEL AAGQRRALQI ERQLRRSDGS LVWVELHISA
LGHGPSLRLM ALVQDISARR HLQQMQRDGS RHLRMVIQRL PLGLAMLQED GRFAYWNEEF
MRLAGHGATA GMDGDGWWRN MCPDEARRQR MQRRFEAAQA RARVAQSPHG SESDSCGTLN
SEEYQLIGSD GCARSVSIGG MLLDEGCLLI LQDQSQRKTA EEEIRRLAFY DALTGLPNRR
LLVDRLQQAL ASSRRRGRCG AVMLLDVDNF KAFNDSLGLE LGDVLLRMIA ERLAQSLGRE
ATLARHSGDD FVVLLEDLGK DSMHAASKLE GEVQRMRSLL LQPLQLSGQS CHITLSIGAS
LFGEQELSAD EVLRRAEMAM YQAKGMGRNT LQFFDPQLQA VLRSRTAMEQ EMREGLVRSQ
FVLYYQPQVA NGRIVGAEGL LRWNHPREGL VPPSLFVSLA EETGLIQQLG EWVLGEACRQ
LAQWAAEPDM ACLMLAVNVS PRQFHQARFV EQVLQALKEH GANPRLLKLE LTESLLLADV
DDTAAKMATL KAHGVGFSLD DFGTGYSSLA YLKRLPLDQL KIDRSFVRDV LSDPNDAAIA
RTIVALGTSL GLQVIAEGVE TEAQRQFLED QHCHAWQGYL LSPPVPVRSF EALVRQAIVS
RPPALSPANL PQQAQEAQDR PQVVECTDGS GVPDAPSNHS
|
|---|
| |