Gene Daci_3562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3562 
Symbol 
ID5749146 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3910223 
End bp3911194 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content70% 
IMG OID641298663 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_001564581 
Protein GI160898999 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.252432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0132448 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGAGA GACATCTGGA AGGCAACGAC CGCCGCGCCT TGCATGAGGC CGCCGCCTGG 
CACGTGAAAT TGCGCGGCGC CTCTGCCACA GAGGGCCTGC AACAGGACTG GCAGAAATGG
CATGACGCCG ATCCCGCCCA CCAGCGCGCC TGGCTGCGCG TGCAATCCGT CACCGCGCAA
CTGTCGCATC TGCCCGCACC CCTGGCGCGC CAGGCGCTGG GCCGTCGCGC CTCGCCCACC
CGCCGCTCCG TGGTGCGCGG CTTGGCTCTG GGCCTGGGCA GCGGCGCCAC GGCCTGGATG
GCCTGGAAAG GCGCACCACT GGAAAGCTGG CAGGCCGGGC AGCGCACAGC CACGGGCGAG
CGCCGGGATC TAAAGCTGCC CGACGGCTCC CTGGTGGCCC TGGATACGGC AACCGCCTTG
GACACCGTTT TCGACGACCG GCAGCGCGTG CTGCGCCTGC ACCGTGGCCG CATCCTCGTC
GCCACCGAGC CCGACGCGCT GGGCCGCCCC TTCAGCGTGC AGACCCCGCA AGGCCATGTA
CTGGCCCTGG GCACGCGCTT CACGGTCCAT CTTGCGGACG ATGGCCTGTG CCATGTCACC
GTGCTGGAAA AGGCCGTGCG CCTGCAGCCT CTGGACGGCG ATGCGCCCTC CGCACAATTG
CAGGCCGGAC AGCAGGCCGC CTTCTCGTCC AGCGCCACCC AGCCGCCCAC GTCCGCAGAC
CCCTTTGCAG CCAGCTGGCA TGAAGGCGGA CTGGTCGCGC TGGACATGCC GTTGGGCCAG
CTGATTGACG CCCTTGCCCG CTACCGGCCC GGCTACCTGG GCTGCTCGGC CGAGGTCGCC
GGGATGCTTG TCTCGGGCGC CTTTCCCGTG GATGACACGG ATCGCGCCCT GGCCGCGCTC
GTCAGCCGCT TTCCTCTGCA ACTGCGCAGC CGCACCCGCT ATTGGGTGGA GGTGCAAGCG
CGATCAAGCT GA
 
Protein sequence
MGERHLEGND RRALHEAAAW HVKLRGASAT EGLQQDWQKW HDADPAHQRA WLRVQSVTAQ 
LSHLPAPLAR QALGRRASPT RRSVVRGLAL GLGSGATAWM AWKGAPLESW QAGQRTATGE
RRDLKLPDGS LVALDTATAL DTVFDDRQRV LRLHRGRILV ATEPDALGRP FSVQTPQGHV
LALGTRFTVH LADDGLCHVT VLEKAVRLQP LDGDAPSAQL QAGQQAAFSS SATQPPTSAD
PFAASWHEGG LVALDMPLGQ LIDALARYRP GYLGCSAEVA GMLVSGAFPV DDTDRALAAL
VSRFPLQLRS RTRYWVEVQA RSS