Gene Daci_3461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3461 
Symbol 
ID5749046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3791686 
End bp3792993 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content66% 
IMG OID641298564 
Productintegrase family protein 
Protein accessionYP_001564482 
Protein GI160898900 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.538189 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCGCC CCTCCAAAAA TCAACCGGTG GACTTGTCCA CACCCATCAA CATCACCCCC 
AGCGTGATCG AGCGCCTCGT GTGCCCAGAA GGCAAAGACC AGGCATTCCT GCGCGACGCC
CTGGTCCCCG GCCTGCGCGT GCGCGTGTCC GCCCACGGGG CCAAGTCTTT CGTCTTCGAG
CGCAAGGTGG GGCAGAAGAC CGTGCGCAAG ACCCTGGGCG ATGTGCGCGT GCTAACTGTC
GACGAGGCCC GTGCAGCGGC ACGGCGCGCT CACGGCACCC TGGACGCAGG CGAGAGCCTG
AACACGCCGG CCGCCCCGCC CGAACCGACG CACGACGCCA CTGTGCAAGA AGCGTGGTCA
GCGTATCTCG CAGACCGAAA AAGCCAATGG GGCGAGCGGC ACTATGCAGA CCACGAGAAG
CTGGCGAGGC CGGGCGGCAA GAAAGCGACC CGGGGAACCA GGGGGCGAGG CGAGACAGTA
CCGGGCATCC TCTATCCGTT GATGGCGCTA CCTTTGACAG ACCTGACCCC CGCAACGATC
GAGGCCTGGG CCGCCGAGCA AGCCAAGACA GGCCCGACCC AAGGGCGCCT CGGTGCGCGG
ATGATCAGCG CATTTATCAA CTGGTGCGAA GACCAGCCAG CCTATGCCGG CCTCGCACCC
CGTGGCGCTG CGGTCGTGAA GACAAAGCGT GTGCGCGAGA CCTTAGGGAA GGCGCGAACC
AAGAGCGATG CGCTGCTGCG CGAGCAGCTC GCCCCCTGGT TCCGCGCAGT GCTCACCATG
AACAACCCGG CCATGTCGGC GTACCTGCAG GTGCTGCTGC TGACAGGCGC GCGCCCGGGT
GAAGTTCGGA CTATCCGGTG GGCGGACATT GACTGGGCTT GGGCAGGTCT GAGCATCCGG
GACAAAGTGG AGGGTGACCG CATCATCCCG CTGACGCCCT ATGTTCGATC GCTGATCGAC
GGCCTGTCGC GGCGCAGTGA GTGGGTCTTC ACCAGTGCGG ACGGGTCGTG CCTCTACAGC
CCCAATCATG CGCACGACAA GGCCTGCCAT GTTGCGGGGG TGCCGGCCGT CACCCTGCAC
GGACTGAGGC GCTCGTTCAA GAGCCTGACC GAGTGGCTGG AGATGCCTGC TGGTGTCGTG
GCCCAGATCA TGGGGCACAA GCCCAGCGCC ACGGCGGAGA AGCACTACAC GGTGCGCCCT
CTGGACCTGC TGCGCATGCA CCACGAGAAG ATCGAGGCCT GGGTTCTTGC CCAAGCTGGC
GTGCCGTTCG TTGCACCGAA GATAGGCCAG CGGCTGCAGG TTGTTTAG
 
Protein sequence
MARPSKNQPV DLSTPINITP SVIERLVCPE GKDQAFLRDA LVPGLRVRVS AHGAKSFVFE 
RKVGQKTVRK TLGDVRVLTV DEARAAARRA HGTLDAGESL NTPAAPPEPT HDATVQEAWS
AYLADRKSQW GERHYADHEK LARPGGKKAT RGTRGRGETV PGILYPLMAL PLTDLTPATI
EAWAAEQAKT GPTQGRLGAR MISAFINWCE DQPAYAGLAP RGAAVVKTKR VRETLGKART
KSDALLREQL APWFRAVLTM NNPAMSAYLQ VLLLTGARPG EVRTIRWADI DWAWAGLSIR
DKVEGDRIIP LTPYVRSLID GLSRRSEWVF TSADGSCLYS PNHAHDKACH VAGVPAVTLH
GLRRSFKSLT EWLEMPAGVV AQIMGHKPSA TAEKHYTVRP LDLLRMHHEK IEAWVLAQAG
VPFVAPKIGQ RLQVV