Gene Daci_3415 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3415 
Symbol 
ID5749001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3746973 
End bp3747659 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content60% 
IMG OID641298520 
Producthypothetical protein 
Protein accessionYP_001564438 
Protein GI160898856 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.48327 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.00123882 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCATCGA ACTTCGCATC CAGCAAGCCT GTAATCCTGA AGAACATCCG TCTGCAGTGG 
GGTGACTTGT TCCAAGCTGC CTCCGGCGAG ATCAATGGCA AGAAGACCGA GCCCAAATTC
AAGGCGGTCG GTTTGTTCGC GCCCGACTCC GACGCTGCCG CGCAAGCCAA GGCCGGCCTG
CTCGAGGCTG CCACGACCCT GTGGGGAGCC AACGCGCAAA ACGTGCTGGT GAATATCAGC
GCGAATTCAA AAGCGGTGCG CAACGGGAAC TCGAAGATCG ACGACTCTGG CGCCGTGCGG
CCTGAGTTCA AGGACATGCT GTTCATCTCG TGCAGCAACA AGCAGCGCCC TCAGATCATC
GCCCCGAAGC TCCTGGACGG CAAATACGTG ACCATTACCG AAGACGGCCG CGGCATGGTA
AACGGCATCG ATGTCACGGA CCGGTTGGGC TACGTGCTCA AGGCGCCCTA TCGCGGCTGC
TATGTCAACC TGAAGGTGCA GTTCGTCGCC GGCAAGGCCT TCAAAGCCAG CAGCGGCGAA
ATGATCCCCA ACCAGGTCTA TGCCAAGCTG GAAGCGGTCC AGTTTCTGCG CGACGGAGAC
CCCTTCGGCG CCGGCCCCAC TTCCGCAGAA GGCTTCGGCG AGGAAGAGGT TTCGCAAGAA
GCCGTCGACT CCGCGTCCCT GTTCTAA
 
Protein sequence
MASNFASSKP VILKNIRLQW GDLFQAASGE INGKKTEPKF KAVGLFAPDS DAAAQAKAGL 
LEAATTLWGA NAQNVLVNIS ANSKAVRNGN SKIDDSGAVR PEFKDMLFIS CSNKQRPQII
APKLLDGKYV TITEDGRGMV NGIDVTDRLG YVLKAPYRGC YVNLKVQFVA GKAFKASSGE
MIPNQVYAKL EAVQFLRDGD PFGAGPTSAE GFGEEEVSQE AVDSASLF