| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3290 |
|---|
| Symbol | |
|---|
| ID | 5748875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3607764 |
|---|
| End bp | 3608687 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641298394 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_001564313 |
|---|
| Protein GI | 160898731 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.33776 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG ACTCCATCCA ATCCTGGGCA GATGCCATCG TGCGCCTGCA CGGCGCCACC
TTCGCCCCTG AAGGCTCCGC CCTGCCCTCC CAGCCCGTGC CGCAGGCACA GCGCCAGGAG
CCGGCCTATC TTGCGGCGCT GCAGGCCTGC AGCGCCCTGG GCTTCATCGC CATCGACGCC
CAGACGCTGG CCTGCGCCTG GCAGGCGCAG ACGCTGCGCA GGGGCCGCTT CGAGGCCACG
CTATGGCCCG ACGATCCGCG CGACTTCGGC CTGGAGGGGG CCGATCCCGC ACTGGCCTTC
CCGGAGTGCC CAAGGTCCCT GGGCCTGTAC GGCGTGCTGC CCGATGCGCA ATGGGTGGGC
CGCATGGCCC GCGCCGGTGT GCCCACCGTG CAATTGCGCT TCAAGTCCGA GGACCGCGAC
GCCATCGCCC GCGAAGTGCG CTCCGCCGTG GCTGCCGTGG AAGGCACGGG CGCACTGCTC
TTCATCAACG ACCACTGGCG CGAGGCCATC GATGCCGGCG CCTATGGCGT GCACGTGGGC
CAGGAAGACC TGGACGCGCT GGCCGGCGCC GACCTGCAGG CCATCCACGC CTCGGGCCTG
CGCCTGGGCG TGAGCACGCA TGGCTATGCC GAAATGGTGC GTGCCCATGC CGTGCAGCCC
AGCTACATCG CGCTGGGCGC CGTCTTCCCC ACCACGCTCA AGAAGATGGC CACGGCTCCG
CAGGGCCTGG CGCGCCTGGG CGCCTATGTG CGGCTGATGC AGCGCTATCC GCTGGTGGCC
ATCGGCGGAA TCTCGGCCGA CCAGTTCCCG GCCGTGCGCG CCACGGGCGT GGGCTCGGTG
GCCGTGGTGC GGGCGCTGGT CAATGCCGAG GATCCTGAAG CGGCGGCGCA GCAGTTGCTC
GCGCGCATGC ACGCTGCAGG CTGA
|
|---|
| Protein sequence | MSNDSIQSWA DAIVRLHGAT FAPEGSALPS QPVPQAQRQE PAYLAALQAC SALGFIAIDA
QTLACAWQAQ TLRRGRFEAT LWPDDPRDFG LEGADPALAF PECPRSLGLY GVLPDAQWVG
RMARAGVPTV QLRFKSEDRD AIAREVRSAV AAVEGTGALL FINDHWREAI DAGAYGVHVG
QEDLDALAGA DLQAIHASGL RLGVSTHGYA EMVRAHAVQP SYIALGAVFP TTLKKMATAP
QGLARLGAYV RLMQRYPLVA IGGISADQFP AVRATGVGSV AVVRALVNAE DPEAAAQQLL
ARMHAAG
|
|---|
| |