| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3280 |
|---|
| Symbol | |
|---|
| ID | 5748865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3593026 |
|---|
| End bp | 3594741 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641298384 |
|---|
| Product | PepSY-associated TM helix domain-containing protein |
|---|
| Protein accession | YP_001564303 |
|---|
| Protein GI | 160898721 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.442593 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.404376 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGG CGCAGATCGG CAAGGTCCCC GGCAGCGGCG CTGCCACGGG CGGTTTCCGC
CAGGCCCAGG CCTGGCTGCA TACCTGGTGC GGGCTGTGGT TTTCGTGGCT GCTGTTCGCG
GTGTTCCTCA CGGGTTCGCT GGCCGTGTTC CAGGAAGCCA TCACGCACTG GATGACGCCC
GAGCACCATG CCGAGGAGGC GGCCGAGGCG GCAGCGCGCG CCGCCGCGCC GGCCGGGCAG
GGTGCGGACC TGGGCCAGCG CCTGGCCTGG GGCGCGGCCT ACATGCAAAA GCACCACCAG
GGCGCGCAGA TGTGGGAGAT CTGGCCGTCC GACGACAAGG GCGGCGGCGA CCTGCATGTC
TACTGGTTCG ACGCCAGGCG CGAATACGCC GATGCCGAGC TGGACACCGC CACGGGCGAG
GAAATGGGGG CCGGCCACGG CCACGGCGCC GCGCGCGCCA CCATGGGCGG CAACCATTTC
GTGGATTTCC ACTATGAACT GCATGCAGGG CAGGTAGGAC TGTGGGTGAT CGGCATTGCC
GCCATGGCCA TGCTGGTGGC ACTGGTCAGC GGCGTGATCA CGCACAAGCG CATCTTCAAG
GACTTCTTCA CCCTTCGCGC ACGCAAGGGC CAGCGCAGCT GGCTGGACGC GCACAACGCC
GTGGCGGTGC TGACGCTGCC CTTCCAGTTC ATGATTGCCT ATACCGGCAT CGCCATCTCC
AGCCTGAGCT TCATGCCCGT TGGCGTCTGG ACGGTCTATG GCACGGACCA GGCCGCCCGC
ACGGCCTTCA TCGCCGACAT GACCGAGGCC GGGCCGCCCG CGCCTTCCGG CAAGCCCATG
GCCGTGCCGG ATCTGGAGTC GTTTGCGCGG CGCGGCCAGG AGCTGATGGG CCAGGCGGTG
CGCGCGGTGG TCGTCAACCA TCCCGGCGAT GCGTCGGCAC GCATCGGCGT CTACGGCTGG
AACAGCGATG ACCGTGCGCA TCAGCGCCTG AGCCCCAATT CGGGCATGGC CATGTTCTCG
GCCGCCACGG GCGAGGTGCT GCAGGTGCGC CTGCCCGGCG GCGCCGACGG CGGCACCCCC
TCGCTGGCCC AGGCGGTCAT GGGCGGGCTG CACATGGTCA AGTTCGGCGG GCTGGCCATG
AAGTGGCTGT ACTTCCTGTG CGGCCTGGCG GGCGCGGCCA TGATGGCCAC GGGCGCCATT
CTCTTCATGG TCAAGCGCCG CAGCCGCCAC CAGGGCGAGT TCGGCAGCGC CACGGCGCGC
GTGTACCGGC TGGTCGAGGG CCTGAACGTG GCGGCCATCG CCGGGCTGGG CCTGGGCTGC
ATCGGCTACC TGTGGGCCAA CCGCCTGGTG CCCGTGGGCC TGGCGCACCG TGATGACTGG
GAGCTGGCCG TGTTCTTCGG GCTGTGGGGC CTGGCGCTGG TGCATGCGTT GGCCTGCGCG
CCGGCCACGG CCTGGCGCCA GCAGATGGGC CTGCTGGCCA TGCTGTGCCT GCTGCTGCCG
CTGCTCAACT GGATCACCGT GGGCGAGCCG CTGTCGGCCC ACATGCTGGA GGGCGACTGG
GAAAGCGCCG GGGTGGAGCT GTTCTGCCTG GCCACGGGGC TGGCGGCCGC CTGGGCCTGG
CGCTGGCTGG CGCGGCGCGG CGCGGGTGCC GCCGCCAAGG CAAGGACGGC CAAAGGCCAG
ACCGCCGTGG CCGGCCCCTC GGAGGTGCAG GCATGA
|
|---|
| Protein sequence | MAKAQIGKVP GSGAATGGFR QAQAWLHTWC GLWFSWLLFA VFLTGSLAVF QEAITHWMTP
EHHAEEAAEA AARAAAPAGQ GADLGQRLAW GAAYMQKHHQ GAQMWEIWPS DDKGGGDLHV
YWFDARREYA DAELDTATGE EMGAGHGHGA ARATMGGNHF VDFHYELHAG QVGLWVIGIA
AMAMLVALVS GVITHKRIFK DFFTLRARKG QRSWLDAHNA VAVLTLPFQF MIAYTGIAIS
SLSFMPVGVW TVYGTDQAAR TAFIADMTEA GPPAPSGKPM AVPDLESFAR RGQELMGQAV
RAVVVNHPGD ASARIGVYGW NSDDRAHQRL SPNSGMAMFS AATGEVLQVR LPGGADGGTP
SLAQAVMGGL HMVKFGGLAM KWLYFLCGLA GAAMMATGAI LFMVKRRSRH QGEFGSATAR
VYRLVEGLNV AAIAGLGLGC IGYLWANRLV PVGLAHRDDW ELAVFFGLWG LALVHALACA
PATAWRQQMG LLAMLCLLLP LLNWITVGEP LSAHMLEGDW ESAGVELFCL ATGLAAAWAW
RWLARRGAGA AAKARTAKGQ TAVAGPSEVQ A
|
|---|
| |