| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3267 |
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| Symbol | |
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| ID | 5748852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3575792 |
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| End bp | 3578635 |
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| Gene Length | 2844 bp |
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| Protein Length | 947 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641298371 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001564290 |
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| Protein GI | 160898708 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.059115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.000153402 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTAGGAC CCGATGGCTT GAAGGCTGGT TGCACCATCA AACAAGAATC ATTCTCAAAT
CATTGTAACC AGCGGCAGCA CTTGCCTAAG AGTGCCATCA GGCGGACCAT CCATGGGCGA
ACAGAGGGAG CAAGTGCGAT CAGGTGTGGC TGGACATCCA GCTGCTGCGC CGGATCGGTA
TCATTTAGAA ACAATCAATC ATCAGCTCAG CATCCATCAG GAGAGCGAAC CATGTTCGAA
ACGCGGGTAG CAGGCACGGC AGGGCAGCAG GCGCTGTGGA GCACGCTGGA CAAGGCCATG
GCGCTGGCGG AGTTCACGCC CGAAGGCCGG CTGATGCGCG CCAACGCCAA TTACGAAGCC
ATTCTTGGCT ACCCGACCTC GGGCGCCGAG GGCCTGCTGC ACAGTGACCT GTGCACCCAG
GCACATGCCG ATCCCGACGC CTACGGCCGG TGGCGCCAGC GCTGGGGCGC GGGCGAGACG
ATCTCGCGCG TGGGCGAACA CCGGCGCCGC GACGGCAGCA CCTGCTGGCT GGAGGCCACC
TATGCCCCCG TGCTGGATAC CCAGGGCGCG CTCAGCCATG TGCTGTGCAT TGCCACCGAC
ATCACGGCCC GGGTGCAGGC CGACCGCAGA CGGCAGGAGC ATTTGCGGCG CCTGTCCCTG
GTGGCCGATG CCACCGACGC AGCCGTGGTG ATCGCCGACG GCAACTGGAC CATCTCCTAT
GTCAACGCAG GCTTCACCCG CATGTTCGGC TGGAGCAGCG AAGAGGTCGT GGGCCGTGCG
CCCATCGCCC TGCTGGTGCC GCATGCCTCG CCCGAATTCA CGGCCGCCTA CCGCGCCGAA
CTGGACGCAG GCAAGCCGGT GTACCGCGAG GAAATCCTCG TCGGCAAGGA CGGCGAGCGG
TATTGGGTCA GCGCCCAGGC CAATCCCGTC ATGGGCCCCG ACGGCCGCCT CCACACCACG
GTGACCGTGA TCACCGACAT CACCGAGGCC AAGATGCACG AGGTGCTGCA GCGGCGCGCC
CTGGAGGCCA TGGCGCGCGA CCAGCCGCTG ACCGAGGTGC TGGACCTGGT CTGCCGCGAG
GTCGAGCGCA TTGCGCCCGA CATTGCGGTC TCGGTGCTGG AAGTCGATGA CCAGAGCCGC
CTGCACCCGC TGGCCGCGCC CAGCCTGCCG GCCTCCTATT CGGCGGCGCT GGACGGCGTG
CCCATCGGCC CCAATGTCGG TTCCTGCGGC GCGGCGGCCT TCCACAACCG GCCCGTGCTG
GTGGGCGACA TCGCCACCGA TCCGTTGTGG GCCGACTTCA AGCACCTCAT CCTGCCGCTG
GGGTATACGG CCTGCTGGTC CACGCCCATC TGCGGGCTGC AGGGCGGCGT GGCCGGCACC
TTTGCCTTCT ACTACCGCCA TTTCGACCGG CCCGGCCCCG ATCCCTTCCA CCAGCGGCTG
GTGGAGGCCT GCACCGACCT GTGCGCGCTG GCGCTGGAGC GCGAGCAGGC ACGCCGCCGC
ATCCGGCAGC TGGCCTTCTA CGACGGGCTG ACCACCCTGC CCAACCGCAG CCTGCTGCTG
GCCCAGGCCG AGCAGGCGCT GTCCGTGGCT TCTCACGAGG GCCACGAGCT GGCCGTGGTC
TTCATCGACC TGGACCGCTT CAAGCAGGTC AACGACTCGC TGGGCCACCC GGCCGGCGAC
CGGCTGCTGT GCAGCGTGGC CCAGCGCATC CAGGCGGAGC TGCGCACGGG CGACATTGCC
GGGCGCCTGT CGGGCGATGA ATTCGTCATC GTGCTGCCAC ACTGCGGCGG TGCGCAGGCG
GCCGAGGTGA TCGAGCGGCT GCAGTCGGCA CTTGGCGAGC CCTGCATGAT CGACGACGTG
TCCCTGGCCA GCACGGCCAG TTGCGGCATT GCCGTGTTTC CCGCCGACGG GCGCGACATG
GAGACCCTGC TGCACCGCGC CGACATGGCC ATGTACCAGG CCAAATCGGG CGGGCGCGGG
CTCTACAGCT TCTTCAGCCC CGAGATGAAC CGCCTGGCGC AGGAGCGGCT GGTGCTGGAG
ACGGCGCTGC GCGACGCCCT GCGCAGCGGC GGCCTGCGAC TGCACTACCA GCCCCAGCTC
GACCTGAAGG ACGGGCGCCT CTACGGCGTG GAGGCCCTGG CGCGCTGGAG CCATGCGGAA
TTCGGCGAGA TCTCGCCCGC ACGCTTCATT CCGCTGGCCG AGGAATGCGG CCTGATCGGC
GAGCTGGGCA CCTGGGCACT GCGCGAGGCC TGCCGCCAGC TGGGCGAGTG GCGCAGCCGG
GGCATTGACG TGCCGGCCAT GTCGGTCAAC CTCTCGCCCA CCAGCTTTCA CAACCTGGAC
CTGCCGCGCA TGATTGCCGA CACGCTGGAG CACAACGCGC TCAAGCCGCA GGACCTCACG
CTGGAGATCA CCGAAAGCCT GCTGCTGGAC ACCAACCCGG GCACCATGCG CACGCTGCAG
GCCGTGCATT CCCAGGGCGT GCGCCTGTCC ATGGACGACT TCGGCACGGG CTACTCCAGC
CTCAGCTACC TGCGCCGCCT GCCGGTCAGC GAGCTCAAGC TGGACCGCAG CTTCGTGGCC
GACCTGGAAA ACGACGAAGC CGCCCAGGCC CTGAGCAACG CCATCCTGGG CATAGGCCGC
AGCCTGCACC TGACCGTGGT GGCCGAGGGA GTGGAGACGG CGGCGCAGAA CACCATCCTG
CGCGAACAGG GCTATCCGGT CGCGCAGGGC TATCTGTTCT CGCGCCCGCT GCCGGCAGCG
GATCTGGAGC GGTGGCTGCA GGCATCGAGC CTGCAAGCCG GCCTGGCGAC GGACGTGGGA
TCGGACGTGG GATCGGACGT GTGA
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| Protein sequence | MVGPDGLKAG CTIKQESFSN HCNQRQHLPK SAIRRTIHGR TEGASAIRCG WTSSCCAGSV
SFRNNQSSAQ HPSGERTMFE TRVAGTAGQQ ALWSTLDKAM ALAEFTPEGR LMRANANYEA
ILGYPTSGAE GLLHSDLCTQ AHADPDAYGR WRQRWGAGET ISRVGEHRRR DGSTCWLEAT
YAPVLDTQGA LSHVLCIATD ITARVQADRR RQEHLRRLSL VADATDAAVV IADGNWTISY
VNAGFTRMFG WSSEEVVGRA PIALLVPHAS PEFTAAYRAE LDAGKPVYRE EILVGKDGER
YWVSAQANPV MGPDGRLHTT VTVITDITEA KMHEVLQRRA LEAMARDQPL TEVLDLVCRE
VERIAPDIAV SVLEVDDQSR LHPLAAPSLP ASYSAALDGV PIGPNVGSCG AAAFHNRPVL
VGDIATDPLW ADFKHLILPL GYTACWSTPI CGLQGGVAGT FAFYYRHFDR PGPDPFHQRL
VEACTDLCAL ALEREQARRR IRQLAFYDGL TTLPNRSLLL AQAEQALSVA SHEGHELAVV
FIDLDRFKQV NDSLGHPAGD RLLCSVAQRI QAELRTGDIA GRLSGDEFVI VLPHCGGAQA
AEVIERLQSA LGEPCMIDDV SLASTASCGI AVFPADGRDM ETLLHRADMA MYQAKSGGRG
LYSFFSPEMN RLAQERLVLE TALRDALRSG GLRLHYQPQL DLKDGRLYGV EALARWSHAE
FGEISPARFI PLAEECGLIG ELGTWALREA CRQLGEWRSR GIDVPAMSVN LSPTSFHNLD
LPRMIADTLE HNALKPQDLT LEITESLLLD TNPGTMRTLQ AVHSQGVRLS MDDFGTGYSS
LSYLRRLPVS ELKLDRSFVA DLENDEAAQA LSNAILGIGR SLHLTVVAEG VETAAQNTIL
REQGYPVAQG YLFSRPLPAA DLERWLQASS LQAGLATDVG SDVGSDV
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