| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3136 |
|---|
| Symbol | |
|---|
| ID | 5748720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3452798 |
|---|
| End bp | 3453721 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641298239 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001564159 |
|---|
| Protein GI | 160898577 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0798912 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACC TGGACCTGAC CACCCTGCGG CTCTTTGTCG CCGCCTGCGA CCTGGGCAAT
ATCGCCCGCG CGGGCGAGCA GCAGCACATC GGCTCATCGG CCATCAGCAA GCGCATGGCG
CTGCTGGAAG AGCAGGTGCA GGCCCCGCTG CTGGAGCGCC ACCGCCGGGG CGTGGTGCCC
ACAGCAGCCG GGCTGATGCT GCTGGAGCAT GCACGCGCCA TGCTGGCCAG CGCCGACCGC
GCGGCCCGCG ACATGGCGGC CTACCAGCAT GGCGTGAAGG GCCAGGTGCG GATACTGGCC
TCGGTGTCGT CGATTGCCGA GTCCCTGCCC GATGACATCG CGGCCTTTCT GCAAAAGCCC
GAGCACGCGC AGATCCGCGT GGACATCGAG GAGCTGACCA GCAGCGAAAT CATCCGATCC
ATCCGCGAAG GCCTGGCCCT GGTGGGCGTG TGCTGGAACG CGGCCGATCT GGAGGGCCTG
CAGACCCTGC CCTACCGCTG CGACACCCTG GCCGTGGCCG TGCCGGCCGG CCACCCGCTG
GCCTTGCGCG ACAGCTGCAG CTTCAGCGAA ACGCTGGATT GCGAGCATGT GGGCCTGCCC
GCCTCCACGG CCGTCTACAC CATGCTGGCG CGGGCGGCGG CCATCATCGG CCGGCCCATC
AATTACCGCG CCGTGGTCAG CTCCTTCGAC GCCACGATCC GCTGCGTGCG CGCCGGCCTG
GGCGTGGCCA TCATGCCCAG GGAGATCCTG GGCATGGCGG GCTCCGGTCA GGGCGGGCAA
GGTGTGCAAG GCGTGAACAT GGTGCCGCTC ACCGATGCCT GGGCGCGGCG CCAGTTCGCC
ATCTGCTTCA GGGACGGCAG CCGGCTATCG CCTGCGGCGC GCACGCTGGT GGACTATCTG
GCCGGGTGCG CCCAGGCGGG CTGA
|
|---|
| Protein sequence | MKDLDLTTLR LFVAACDLGN IARAGEQQHI GSSAISKRMA LLEEQVQAPL LERHRRGVVP
TAAGLMLLEH ARAMLASADR AARDMAAYQH GVKGQVRILA SVSSIAESLP DDIAAFLQKP
EHAQIRVDIE ELTSSEIIRS IREGLALVGV CWNAADLEGL QTLPYRCDTL AVAVPAGHPL
ALRDSCSFSE TLDCEHVGLP ASTAVYTMLA RAAAIIGRPI NYRAVVSSFD ATIRCVRAGL
GVAIMPREIL GMAGSGQGGQ GVQGVNMVPL TDAWARRQFA ICFRDGSRLS PAARTLVDYL
AGCAQAG
|
|---|
| |