Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_2885 |
Symbol | |
ID | 5748466 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 3164009 |
End bp | 3168490 |
Gene Length | 4482 bp |
Protein Length | 1493 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641297985 |
Product | fimbrial assembly protein |
Protein accession | YP_001563908 |
Protein GI | 160898326 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.694358 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.827989 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCGCA TTGCAAGTTG GAAAACCATG CATGGCCCGA TGGCCATGGC GCTGGCGCTG TGGACGTGCG CACTGGCCCT GGCCAGTACG CCGGCGCAGG CCCAGGGGCG TGCGGACACC GTGCTGTCCC AGATGCCGCT GTTCGTGAAC CAGGCGCTGG CGCCCTTGAA CATGCTGGTG ATGGGGCGTG ACCACAAGCT GTACTACGAG GCCTACAACG ATGCCTCCGA CCTCAACGGA GACGGTGTGA TCGATGTCGG GTACAAGCCG GACCAGATCG ACTACTACGG CTACTTCAAC AACAACGTCT GCTACAGCTA TTCCAAGGGT GTTTTCGTGC CCTCGCAGGC AGCGACCGGA AGCAACAGGA AAAAGTGCTC GAACAACTGG AGTGGCGACT TCCTGAACTA TCTGGCCACA TCGCGCATGG ACGCCATACG CCGCGTGCTT TATGGCGGCA TGCGTGCGGA GGACACTGCT TCGCGCACCG TTTTGCAGAC CGCCTACATT CCCAGGGATG CGCACAGCTG GGGCAAGGCC TATGACCCTG CGCGGGATCT CGGGGTCTAC AGCATTTCGG ACTATGCGCC GCTGCGCCAG CCGGCGGCCG GCACGCGCCA CCTGTTTGCC GTCACCACGC TGGGGGAGGC CGCTGGCGTC ATCACGCAGT TGCGCGTGCT CAATGACTCC TCGTTCCAGA TCTGGGATTG GGTGTCCCAG GAGGGCTTTG CAGGGCAGAG CAACTGTGCA GGCAGCAATT CGTGCGCGCG AGGCAGCAGC AGGATCACCG ACTACAACCT GCTTGTGGAG GCCTGCTCCA GCAGCAATGT CCAGTTGCTC GAGGCCAGCT GCAAGGCCTA TCCCAACGGC GGCAAGACCA TCTACAAGCC CACGGGGCTG CTGCACGACT TCGGAGAGAA CGGGAAGATG TACTTCGGCC TGCTCACAGG CTCGTACGAG AAAAACATCG CCGGCGGCGT GCTGCGTCGC AATATCAGCA ATTTCGCAGA GGAAGTCGAC CCTCAGACGG GCCAGTTCAA GACGGGTGTC AATGGCGTGG TCGCCAACAT AGACCGCCAG CGCCTGATCG GCTACACCGG CGGCAAATAC GTGGAATGCG GCTGGATCAC GTCCGGCCCC ATCAGTTCGC TGGACAAGCC TTCGAAGTGC GCCATGTGGG GCAATCCCAT CAGCGAAATG ATGTTCGAGA CCATGCGCTA TTTCGGCGGC GCGTCCCAGG CCCTCGACAT CTATGACTAC GCCGCCGGCT CCTCCAAGGA TGCGTCCCTG GGCCTGTCCA AGCCCGCCTG GGAAACGCCC TACAGGGCCA AGGCCGAAGG CGGGGGCGGC TACCAGTACT GCTCCCGTCC CGTCATGACG GTGCTCAGCG ACATCAATCC CTCCTACGAC GGCAAGCTGC CCGGCAGCCG CTACGCGAGC GTCGGCGCCA GCGCCCTCAA TGGCTTCAAT GTCTCTGACG AGGTGGCGGC CATCGGCTCG GCCGAGCGCA TAGACGGGAA GAACTTCTTC ATCGGCCAGT CAACATCGGC CAATGCCGAC CAGGCTCCTT CGGTCAAGAC CATTGCAGAC CTGTCCTGGG CGCGCGGCCT GTCTCCCGAG GAGCCCAGCA AGGAAGGCAC CTACTATGCC GCCGGTGTGG CCCGTTTCGG CGCCAGGAAT GCCATCTTCG GCAACAGCCA GGGCAAGAAT GCGTTGAGAA CCTACTCCGT GGCCATTGCG TCACCGCTGC CGGAAATACG CTTTCCGATC GGCGGCAAAC GCTTTGTGAC CATTGCGCCT TTTGCCAAGA CCGTCTCCGG CAGTGCCGGC GGCAGCACCG TGAACAATGC GGTCTTCACG CCGACCAACC AGATCGTCGA CTACTACGTG GTCAACATTG CCAACACGGG CAAGGCGGAC ATCGATGCCT CGGTCAATGG CGGGCGGCCT TATGCGGAGT TCCGCATCAA CTACGAGGAC GTGGAGCAGG GCGCCGACCA TGACATGGAC GCCATCGCGC GCTACACGGT CGCGCTGCAG GCCGATGGCA AGGTGAAGAT CGACATGGTG TCCGAATACG CCGCTGGCGG CCTGGGACAG CACATGGGCT ATGTGATCTC GGGCACCACC AAGGACGGCA TGTACCTGGA GGTGCGTGAC AAGGACACGG CCTCGGCCTA CTACGCCTAC AACACGCCCC CCAATCGCGA TCCGGGCTAC TGCCGGGGCA GCATCTCGGC CCAGCAGCGC ACGGAATGCT CGAACCTGGG GCTCACGGCC ACCCGCAGCT TCACTCCGGG CAATGCGACC GACGCGGGCA GCTTCCTGAA GGGGCCGCTG TGGTATGCCG CCAAGTACGG TGTGCCGGAC CGCGACCCCT CCAAGATCAC GGGAGATCCG GACAACTATT TTCTGGTGAC CAATGCCGGC ACGCTCAAGG AGCAATTGAC CAAGGCGTTC AACGACATCC TGCAGAGCAT CAGTTCCGTG ACGGCGGTCA GCGTGGACAT GCCCACTGCG ACACTGGGCG AAGGCGCCGA CCTGTACCGG ACCACGTTCG AGGTCCAGTA CTGGAGCGGC GATGTCATCC GCGAGAAGCT CACCACCAGC GACAGAACGC TGGTCTGGAG CGCGGCGGAA CTCCTGTCGG CGCGGTCCGC CGATGACCGC AAGATCTACT ACCCCAGCAG GACCGGCAGT GCCGTGTCGC TGAGCCCTTT CACGTACTCC AGTCTCAGCG GGCAGCGCTC CGATGCGTCC TGGCTGGCCG TGCTCAACAC GGACCCGGCC ACGAACTCCG CCGATGGCCA GGCAAAAAAG CGCATCGAGT TCCTTCGTGG CGAGGTGCGC GATGACTTGC GCGTGCGCAA GCCCCTGGCC AGCGGAAAGC CCAATGTGCT GGGCGATATC GTCAATTCCT CGCTGGTGCG GGTCAAGGGC GGCCTGTACC GCGCCTCTGC CGCGGACAAG CTGGAGGGCA GCACCGCCTA TGCCGCCTTT GCCGCGAAAC AGGCTGCCAA GGAGATGCTG TATGTGGGCG CCAACGACGG CATGCTGCAC GCCTTCGACG CGGCATCGGG CAAGGAGGAG TTCGCCTTCA TTCCATCGGG CGTGAAGGAT TCGCTCAATG TCCTGGCATC CCGGTATGGC GCGGGCGGCG CTCCTCACCG CTACTTCGTG GACGGGACGC CCGTGGTCTC GGATGTCTAC TTCGGCAACG CCTGGCACAG GGTGCTGGTC GGCAGCCTGG GCGCGGGCGG GCGGCAGGTC TTCGCGCTGG ACGTCACGGA CCCCACCTCC CCCCGGTTGC TGTGGGAGTT CGGGGTTGAA CAGGACGAAC GCATGGGTTA CTCGATGCCC GCGCCTGTCG TGGCGCGGCT CAACGACGCC GGCCGGTCCA AGGGCAGGTG GGTGGTATTC CTGTCCAATG GCTACCAGGC GTCGAACAGC ACCTCCGGCG AGTCCAGCCT GTTTGTGCTG GATGTCTCCA GTGGCGAGGT CATCCGGCGC TTTGATTTCG CGGCAGGCAT GACGGCCGCG GAGCTGAACG CGCTGCCTGC GCCGAAAAAC GGCCTGTCGC GTGCCGCCGT GGTGGACAAC AACGGCGATG GCAAGGTGGA CGTGGCCTAT GCCGGTGATC TTGCGGGCAA TGTTTGGCGC GTGGACCTGG CCAGTGGTGC CAGCGGCTCA TGGAATGCGC AACTGTTCTT TGTGGCACGC GAGTCCGAAC GCAGCGGCGG CAAGCGGCTG TCCATCACCA CCGCACCCTA CGTGGTGCGG CACTCCAGCG GCAAGGGCGA TGTGGTGGCC TTCGGCACGG GCCGCTTCAT GACGGATGAC GACAAGCTGG ACATGCGCCG GCAATCGGTG TTCGGTATCT GGGATCGCTA CGGCACACCC GCCACGGCGG CGCCGCAGCC GCTGCCTACC GCCGGCAAGG GACGCGGGGA TCTGCAGGCC CAGCAGTTCA CCCAGGTGAG CGGCTTTCCG GGCAAGTTCG CCCTGTCGGC CAACCCGGTC ACCTGGTACA AGGACGCCAC CAGCACCGCC GACTCCAATG TGCACAGCTG GGGCTGGTAC GTCGATCTGC CGCGCGATGG AGAAAGACTG GTCTACGACA TGAGCCTGTA CGGGCGGGGA CTGGTGTTCA CCTCCATCCG GCCACCGCTG GGCGACCCCT GCTCCGCAGG CCTGGCCAGC ACGATCTACG CCATCGATCC CGACACCGGG GGCAAGACCG ACTATGTCGC CTTCGATGTG AACGGCGACG GCATCTTCAA CGCCGCCGAC AACCTGGCAG GCCAGCAGGT CAACGGCTAC GAGGTGGGGC CGGGCAAGCC CACCATCAGC GGCGCGAAGA TCTTCGACTC CAGCGGAAAG CAAAGCGGGG CAGGAGGCGC GGGCAAGAGC GGGGGCGACG ATATCAACAG CGGAGTGGAC CGGGGGCGAC AGAGCTGGCG CCGCCAGCCA GCGAACCCGT GA
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Protein sequence | MARIASWKTM HGPMAMALAL WTCALALAST PAQAQGRADT VLSQMPLFVN QALAPLNMLV MGRDHKLYYE AYNDASDLNG DGVIDVGYKP DQIDYYGYFN NNVCYSYSKG VFVPSQAATG SNRKKCSNNW SGDFLNYLAT SRMDAIRRVL YGGMRAEDTA SRTVLQTAYI PRDAHSWGKA YDPARDLGVY SISDYAPLRQ PAAGTRHLFA VTTLGEAAGV ITQLRVLNDS SFQIWDWVSQ EGFAGQSNCA GSNSCARGSS RITDYNLLVE ACSSSNVQLL EASCKAYPNG GKTIYKPTGL LHDFGENGKM YFGLLTGSYE KNIAGGVLRR NISNFAEEVD PQTGQFKTGV NGVVANIDRQ RLIGYTGGKY VECGWITSGP ISSLDKPSKC AMWGNPISEM MFETMRYFGG ASQALDIYDY AAGSSKDASL GLSKPAWETP YRAKAEGGGG YQYCSRPVMT VLSDINPSYD GKLPGSRYAS VGASALNGFN VSDEVAAIGS AERIDGKNFF IGQSTSANAD QAPSVKTIAD LSWARGLSPE EPSKEGTYYA AGVARFGARN AIFGNSQGKN ALRTYSVAIA SPLPEIRFPI GGKRFVTIAP FAKTVSGSAG GSTVNNAVFT PTNQIVDYYV VNIANTGKAD IDASVNGGRP YAEFRINYED VEQGADHDMD AIARYTVALQ ADGKVKIDMV SEYAAGGLGQ HMGYVISGTT KDGMYLEVRD KDTASAYYAY NTPPNRDPGY CRGSISAQQR TECSNLGLTA TRSFTPGNAT DAGSFLKGPL WYAAKYGVPD RDPSKITGDP DNYFLVTNAG TLKEQLTKAF NDILQSISSV TAVSVDMPTA TLGEGADLYR TTFEVQYWSG DVIREKLTTS DRTLVWSAAE LLSARSADDR KIYYPSRTGS AVSLSPFTYS SLSGQRSDAS WLAVLNTDPA TNSADGQAKK RIEFLRGEVR DDLRVRKPLA SGKPNVLGDI VNSSLVRVKG GLYRASAADK LEGSTAYAAF AAKQAAKEML YVGANDGMLH AFDAASGKEE FAFIPSGVKD SLNVLASRYG AGGAPHRYFV DGTPVVSDVY FGNAWHRVLV GSLGAGGRQV FALDVTDPTS PRLLWEFGVE QDERMGYSMP APVVARLNDA GRSKGRWVVF LSNGYQASNS TSGESSLFVL DVSSGEVIRR FDFAAGMTAA ELNALPAPKN GLSRAAVVDN NGDGKVDVAY AGDLAGNVWR VDLASGASGS WNAQLFFVAR ESERSGGKRL SITTAPYVVR HSSGKGDVVA FGTGRFMTDD DKLDMRRQSV FGIWDRYGTP ATAAPQPLPT AGKGRGDLQA QQFTQVSGFP GKFALSANPV TWYKDATSTA DSNVHSWGWY VDLPRDGERL VYDMSLYGRG LVFTSIRPPL GDPCSAGLAS TIYAIDPDTG GKTDYVAFDV NGDGIFNAAD NLAGQQVNGY EVGPGKPTIS GAKIFDSSGK QSGAGGAGKS GGDDINSGVD RGRQSWRRQP ANP
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