| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2809 |
|---|
| Symbol | |
|---|
| ID | 5748385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3084562 |
|---|
| End bp | 3085359 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641297904 |
|---|
| Product | hydroxypyruvate isomerase |
|---|
| Protein accession | YP_001563832 |
|---|
| Protein GI | 160898250 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3622] Hydroxypyruvate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.356992 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTT TCGCCGCCAA CCTGTCCATG CTCTACAACG ACCTGGACTT TCTTGACCGC
TTCGAGGCCG CCGCGCGCGA CGGTTTCCAG GCTGTCGAAT ACCTGTTTCC CTACGACTTC
GCGCCCGGGC AACTGGCCCG GCGACTGCAG GACCACGGCC TGCAGCAGGT GCTGTTCAAC
GCCCCGCCCG GCGACTGGAA CGCGGGCGAG CGCGGCCTGG CCTGCATCCC CGGGCGCGAG
GCGGAATTCG CCCAGGGCAT GGAACGTGCC GTGGCCTACG CCCAGGCCCT GGGCTGCCCG
CGCATCCACG TCATGGCCGG GCTCAAGCCC GCAGGCGCCA GCGATGACAT CCTGCGCGCA
ACCTACATCG CCAACGTGCG CCATGCCGCA CGGCTGGCCG CGCCCCACGG CATCGCCATC
CTGCTGGAGC CCATCAACGG CCGGGACATG CCCGGCTTCT TCCTGAGCCG CCAGGACCAG
GCCCATGCGC TGCTGGCCGA CATTGCCGAG CCCAATGTCC AGGTCCAGAT GGACCTCTAC
CACTGCCAGA TCGTCGAGGG AGACCTCGCC ATGAAGATCC GCCAGTACCT GCCCACGGGC
CGCGTGGGGC ATGTGCAGAT CGCAGGCGTG CCCGAACGCC ACGAACCCGA CGTGGGCGAG
GTCAACTACC CCTACCTGTT CCGCCTGCTG GACCAGCTGG GCTACGACGG CTGGATAGGC
TGCGAATACC GCCCCGCGCG CGGCGCGGCG GCGCACGCCA CCAGCGAGGG GCTGGGGTGG
ATGAAGGAGT GGCTGTAG
|
|---|
| Protein sequence | MPRFAANLSM LYNDLDFLDR FEAAARDGFQ AVEYLFPYDF APGQLARRLQ DHGLQQVLFN
APPGDWNAGE RGLACIPGRE AEFAQGMERA VAYAQALGCP RIHVMAGLKP AGASDDILRA
TYIANVRHAA RLAAPHGIAI LLEPINGRDM PGFFLSRQDQ AHALLADIAE PNVQVQMDLY
HCQIVEGDLA MKIRQYLPTG RVGHVQIAGV PERHEPDVGE VNYPYLFRLL DQLGYDGWIG
CEYRPARGAA AHATSEGLGW MKEWL
|
|---|
| |