Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_2701 |
Symbol | |
ID | 5748277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 2969111 |
End bp | 2971120 |
Gene Length | 2010 bp |
Protein Length | 669 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641297796 |
Product | conjugal transfer coupling protein TraG |
Protein accession | YP_001563724 |
Protein GI | 160898142 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.143285 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGGGA CGAACGTGCT GTTCGGTCAG ATCGCCGTGG TATTCGGCAT CGTGATCGCC GGCGTGTGGG CAGCCACACA ATGGACAGCC GCCGCCCTGG GCTATCAGCT ACGCCTTGGC TCGCCCTGGT TCGACTTCTT CGGTACGCCG GTCTATCACC CGTGGCGGCT GTTCGAGTGG TGGTTCTTCT TCGATGCCTA CGCGCCCAGC GTCTTTGACA TCGGCGGCGC CATTGCGGGT GGCAGCGGCC TGGTGGCCGT GCTGGTGGCC ATCGGCATGT CGATCTGGCG CTCGCGGCAA TCGCGCCTGG TCACGACCTA CGGCTCGGCG CGCTGGGCGA ACGCGGATGA CATTCGCAAG GCGGGACTCA CGCAGCCGGC CGGCGTGTTC CTCGGCCAGC ACGACCGTCA GTACCTGCGG CATGAAGGGC CGGAACACGT CCTGACCTTC GCACCCACGC GCAGCGGTAA AGGCGTTGGC CTGGTGGTGC CGACGCTGCT GTCCTGGCCG GCCTCGGCCG TCATCCACGA CATCAAGGGC GAGAACTGGC AGATCACCGC AGGCTGGCGC TCGCGCTTCT CGCATTGCCT GCTGTTCAAC CCGACCGATG CGAAGTCAGC GGCCTACAAC CCGCTGCTGG AGGTGCGTCG CGGCGCCCAT GAGGTGCGCG ACGTGCAGAA CATCGCGGAC ATCCTGGTCG ATCCCGAAGG CGCGCTGGAG CGGCGCAACC ATTGGGAGAA GACCAGCCAT GCTCTGCTGG TCGGCGCCAT CCTGCACGTG CTCTATGCGG GCGAGGACAA GACGCTGCGC GGCGTCGCCA ACTTCCTCTC CGATCCGGCT TGCCCATTCG AGCTGACGCT GCACCGGATG ATGACCACGC CGCATCTCGG CTATGGCCCG CATCCGGTCG TCGCATCGGC GGCGCGCGAA GTGCTCAACA AGTCGGACAA CGAGCGTTCC GGCGTGTTGA GCACGGCCAT GTCGTTCCTC GGCCTGTACC GCGACCCTAC GGTGGCCGAA GTCACGTCGC GTTGCGATTG GCGCATTGCC GACCTGATCG CGGCCGAGCA TCCGGTATCG CTGTACCTTG TGGTGCCGCC TTCAGATATT TCGCGGACGA AGCCGCTGAT CCGCCTGATC CTCAATCAGA TCGGGCGACG GCTGACGGAA TCGCTCGATG GCTCCGACGG CATCGAGCGC CGCCACAAGC TGCTGCTGAT GCTTGACGAG TTCCCGGCGC TCGGGCGGCT CGACTTCTTC GAGACGGCAC TGGCCTTCAT GGCGGGCTAT GGCATTCGCA GCTTTCTCAT CGCGCAGTCG CTCAATCAGA TCGACAAGGC GTATGGGCAG AACCATTCGA TTCTGGACAA CTGCCATGTC CGCGTGACGT TCGCCACCAA CGACGAACGC ACGGCCAAGC GGATCTCCGA AACGCTGGGC ACTGCAACCG AGCTGCGCGC ACAGCGCAAC TACGCAGGCC ACCGGCTCGC GCCGTGGCTG GGCCACCTGA TGGTGTCGCG CCAGGAGACC GCGCGCCCAC TGCTGACGCC GGGCGAAGTG ATGCAGTTAC CGCCGGATGA AGCCGTGGTG ATGGTGTCCA GCGTGGCGCC GATCAAGGCC AAAAAGCTGC GCTATTACGC GGACACCAAT TTCAAGCGGC GCGTGCTGCC GCCGCCCGTG CTTGCGGCCG GACGCTATGC CGACGTTCCG CCCTCGCGAG CCGACGACTG GAGCGGGCTG GCGATTCCCG CCGTGCCTGC CGCACCGGCC ACTGCACCTA CTGATGGCCT GGAGCACTTG GGTTCGGCCG ACGACGGCGG ACCGCGCCGT CAGCCCGAAC TTTCCGAAGC CGTCGCCTAC GACCCCGAGC TGGCCGCGTC CGCAGCCGAC CTCGGGTTGC TCGATGACGA TGACGACCTG CCGCTTCCCC TTCCTCGCCA GCTTGACCCG GCCATGCAGC GCACGGCCCG GCTGGCTTCC CTCGACCCCA ACGACGGAAT CGAGCTATGA
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Protein sequence | MQGTNVLFGQ IAVVFGIVIA GVWAATQWTA AALGYQLRLG SPWFDFFGTP VYHPWRLFEW WFFFDAYAPS VFDIGGAIAG GSGLVAVLVA IGMSIWRSRQ SRLVTTYGSA RWANADDIRK AGLTQPAGVF LGQHDRQYLR HEGPEHVLTF APTRSGKGVG LVVPTLLSWP ASAVIHDIKG ENWQITAGWR SRFSHCLLFN PTDAKSAAYN PLLEVRRGAH EVRDVQNIAD ILVDPEGALE RRNHWEKTSH ALLVGAILHV LYAGEDKTLR GVANFLSDPA CPFELTLHRM MTTPHLGYGP HPVVASAARE VLNKSDNERS GVLSTAMSFL GLYRDPTVAE VTSRCDWRIA DLIAAEHPVS LYLVVPPSDI SRTKPLIRLI LNQIGRRLTE SLDGSDGIER RHKLLLMLDE FPALGRLDFF ETALAFMAGY GIRSFLIAQS LNQIDKAYGQ NHSILDNCHV RVTFATNDER TAKRISETLG TATELRAQRN YAGHRLAPWL GHLMVSRQET ARPLLTPGEV MQLPPDEAVV MVSSVAPIKA KKLRYYADTN FKRRVLPPPV LAAGRYADVP PSRADDWSGL AIPAVPAAPA TAPTDGLEHL GSADDGGPRR QPELSEAVAY DPELAASAAD LGLLDDDDDL PLPLPRQLDP AMQRTARLAS LDPNDGIEL
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