Gene Daci_2344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2344 
Symbol 
ID5747907 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2582952 
End bp2584163 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content65% 
IMG OID641297426 
ProductHAF family protein 
Protein accessionYP_001563367 
Protein GI160897785 
COG category[S] Function unknown 
COG ID[COG5563] Predicted integral membrane proteins containing uncharacterized repeats 
TIGRFAM ID[TIGR02913] probable extracellular repeat, HAF family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.734179 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGTTC CGGCATTTTA TTTCCCTCTG GTTTTGACTG GCGGCTTGAT GCTTGCCTCC 
AGTATGGCTC AGGCAGGACC CATGCAGGAT ATAGGGACTG CCTCGGGTCC GCAGTGCGCA
GGCCTGGATG TCAATAATTC CGGATATGTG GTGGGCGCCT GTGCAGAGGC CAATGGATCT
GCCTCGGGAT TTGTTGCCCT GGCGCCCGGC AGCGCGGTGG ATCTGGCACA TTTGGTCGAT
GGTCGCAATT GCGTGGCAGG CGCCATCACC AACGTGGGCC GTCTGGTCGG GTGGTGCATG
AACAGCAATT CGCTGCCCAC TGGCGTGGTC TGGAATGCCA CGGCGCCCAC CACCGTCCAG
GCCCTGCAGG CCCTTGTGGG CGGCGTGCGC ACCAAGGTGA CCGCGCTCAG CCAGAGTGGC
GCGGTCGCGG GTGTCAGCCT CAATGCCGAC AACACGGCCT TGCCGGTGAT GTGGCGCAAC
AACGAAACCA CGGCACGCAC GCTGCCGGCC GGCCTGCTGG GCCTGGTTGC CACGAACTGC
GTGCCCGCCG ATGTGGACGA CCATTCCGTG AATCCGACGA TGCCCAATAT CGTCGGCAAC
TGTCCCGGCT CCAGCGGCCG GCCCCAGCCC GTGCTGTGGT CCCCGGGGCT GCTGGGAACC
TACGCCTCCG CCGCGCTGCC GCTGCCTGCC GATGCGCTGC ACTGCCGCGC TTCCCAGGTG
GTGAACTCGC GCATCCTGGG CCATTGTGAT TTTGGTGCAC AGGGCGGTCA TGCCGTGCTG
TGGAGCAATC CGGCTTCGGC GCCGCTGGTT TTGTCCACGG GCGCCCAGCG CAGCAGTGCC
AAGACGCTGA ACGCCAATGG CCGGGTCATC GGCAAGTACA GCAACACCAA CGGCGATCCC
GTTCCCTTCC ACTGGGACAC CACGACCAAT GTGCGCACCG ACATCCCCGC GCCAACCGGT
GGCATGCATG CCTCGGTGTC TGACATAGGC GACAACGGCA ATGTGGTGGG CAGCAGCGAG
ATGGGCGATG GCACGCGCCA TGCGTTCAAG TGGACCCTGG CCGGAGGATC GGTGGACCTG
GGCACGCTGC CTGGCGGCAA GAACAGCGGT GCCATTGCGC TCAGCCAGGA CGGCTGCTAT
CTGACGGGCG GCAGCGAGAC GGGCTCGGGG CAGGATACGC ATGCGTTTGT GCAGAACCTG
TGTGCGCCTT GA
 
Protein sequence
MTVPAFYFPL VLTGGLMLAS SMAQAGPMQD IGTASGPQCA GLDVNNSGYV VGACAEANGS 
ASGFVALAPG SAVDLAHLVD GRNCVAGAIT NVGRLVGWCM NSNSLPTGVV WNATAPTTVQ
ALQALVGGVR TKVTALSQSG AVAGVSLNAD NTALPVMWRN NETTARTLPA GLLGLVATNC
VPADVDDHSV NPTMPNIVGN CPGSSGRPQP VLWSPGLLGT YASAALPLPA DALHCRASQV
VNSRILGHCD FGAQGGHAVL WSNPASAPLV LSTGAQRSSA KTLNANGRVI GKYSNTNGDP
VPFHWDTTTN VRTDIPAPTG GMHASVSDIG DNGNVVGSSE MGDGTRHAFK WTLAGGSVDL
GTLPGGKNSG AIALSQDGCY LTGGSETGSG QDTHAFVQNL CAP