Gene Daci_1903 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1903 
Symbol 
ID5747460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2105586 
End bp2106245 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content72% 
IMG OID641296981 
ProductSmr protein/MutS2 
Protein accessionYP_001562928 
Protein GI160897346 
COG category[S] Function unknown 
COG ID[COG2840] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00344455 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTTTGA AAGCCACCAG CCTGCAGGAC CTCGCGCCAG TGCGCCGCGC ACTGGCCGAA 
GCCGCCGCCC AAGAGGCCCT GCTCCAGCAG CAGCGCGCCG AGGCGGCGCG CCGCCTCCTG
GCCGAGCAAA AGCTGTTCGA GAACACCGTG GGCCCGGTGC ATGCGCTCAA GTCCGCGCAC
GCCCGCCACC TCCACGCCCC CGAGCCCCCC GAGCCGCTGC CCCTGCAGCT GGAGCTGGAC
GAGCAGCGCG TGCTGCAGGA GGCCATGAGC GACGAGTTCG ACGTCAGCAC CCTGCTGGAC
ACCGACGACC AGCTCAGCTT CCGGCGCCCC GGCATCGGCC TGGACGTGAC GCACAAGCTG
CGCGCCGGGC AGTGGAGCAT CCAGCGCCAG CTGGACCTGC ACGGCCTGCG CGTGGACGAG
GCGCGCGAGG CGCTGGGCCA GTTCATCCGC CTGTCGCACC GCACCGGCAT ACGCTGCGTG
CGCGTGGTGC ACGGCAAGGG CCTGGGCTCG CCCGGCAAGA CCCCCGTGCT CAAGGGCCGC
GTGCTGCGCT GGCTGGTGCA GAAAAAGGAA GTGCTGGCCT TTGTGCAGGC CCGCCCGGCC
GAAGGTGGCG CGGGCGCCCT GGTCGTCCTG CTGCAGCCGG GCAGGCGCCA GCTGTACTGA
 
Protein sequence
MTLKATSLQD LAPVRRALAE AAAQEALLQQ QRAEAARRLL AEQKLFENTV GPVHALKSAH 
ARHLHAPEPP EPLPLQLELD EQRVLQEAMS DEFDVSTLLD TDDQLSFRRP GIGLDVTHKL
RAGQWSIQRQ LDLHGLRVDE AREALGQFIR LSHRTGIRCV RVVHGKGLGS PGKTPVLKGR
VLRWLVQKKE VLAFVQARPA EGGAGALVVL LQPGRRQLY