Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_1685 |
Symbol | |
ID | 5747243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 1874901 |
End bp | 1876658 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641296766 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001562713 |
Protein GI | 160897131 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGCGG CGGGCTGGAG CATGGTTGCC GGCGATCCCG CCGCACCGGG CGAGGCGCTG GACGAAGACC TCAAGCGCGT GGCCATGGAG GCCGCGCCCG ACGGTATCTT GCTTGTGGAC CGCAGCGGCC GGATCCTGCT GGCCAATCCC GCCATGCAGG CCATGAGCGG CTATGGCGCC GCCGAATTGC TGGGCCACTC GCTGCAGATG CTGCTGCCGG CCGAGGCGCA GGCGGCCCAC GGGCCGCAAC TGCAGTCCTA CTTCGCCCAG CCCGCGCGCC GGCCCATGGG CCAGGGGCGG GACCTGTGGC TGCTGCGCAA GGACGGCAAG CGCCTGTCGG TGGACATCGC CCTGGGCCAC TCGCCGCACG GCAGCGGCGT GGCCGTGGCC TTCGTGCGCG ACCTGTCGCA GCTGCGCCAG ATGGAAGCCT GCATGCACTA CCACGCCACC CACGACACGC TGACGGGCCT GCTCAACCGC TGGCAGTTCG GGCTGCAGGT GGAACAGGCG ATCTCGCAGG CGCAGGCGCA GTCTGAATCG GGCGCCGGCC CCGCGTCCTT TGCGCTGCTG CTGCTCGACC TCGACAACTT CAAGGCCATC AACGACGGTT ATGGCCACGA CGTGGGCGAC CAGGTCCTCA AGGAGGTGGC GCGCCGCCTG CAGGCCGCGC TGGGCGGCTC GGCCACGCTG GCGCGCATGG GCGGTGACGA GTTCACCGCC CTGCTGCAGC CCTGCAACGA GCCCGATCTG CGCCAGCGCA TCGACGCGCT GCTGCACGAG CTGTGCCGGC CCTGCACCAT AGGCCACTAC GCGCTGAACT TCGGTGCCAG CGTGGGCGCA GCCTTCTATC CCCAGGACGC GGGCGATGCG GCCACCCTCA TGCGCTATGC CGACATGGCC ATGTACGACG CCAAGCAGCG CAGCCGCTCC TCCTATGCGC GCTATGCCAG CGCCATGGGC GAGGCCATGG CCGAGAAAGT GCTGCTGCAC GAACGCCTCA AGCGTGCCCT GGACCGGGGC CTGCTGAGCC TGCACTTCCA GCCCCAGGTG CAGGTGCTGG GCGGCCAGGT CCAGGGCGTG GAAGCGCTGC TGCGCTGGAA CGACGAGCAG ATGGGCTGGG TCTCGCCCGA ACGCTTCGTG CCCGTGGCCG AATCCACGGG CCTGATCCTG GCCCTGGGGG AGTGGGTGAT CGATGCTGCC TGCCGCCAGG CCGGCGACTG GCTGCGCGCA GGCATGCCGC TGCGCGTGGC GGTCAACCTC TCGGCCCAGC AACTGCGGCA GGCCGACCTG CAGCAGCGCC TCATGGCCAG CCTGGCCCGG CATGGCGTGC CGCCGCACCT GCTGGAGCTG GAGGTCACCG AGTCCGCTGC CATGACCGAC CCGCTGCAGG CGCGCGAGCT GCTGGGCAGC CTGCTGGCGG CCGGCGTCTG CGTGGTGCTG GACGATTTCG GCACCGGCTA CTCCTCGCTG GCCCACCTGC GCGATCTGCC CGTCTCGCGC GTGAAGATAG ACCGCACCTT CATCGGCCCC ATGCTCGACA GCCCGGCCGA TGCCAAGATC GTCAAGGCCG TGATCGCGCT GGCCCGAACC CTGGGCCTGC AGGTGGTCGC CGAAGGCGTG GAAACGGCCG AGCAACTGCG CCTGCTGCGC ATCCTGGACT GCGACGCCTA CCAGGGCTGG CTCTTCGCCC GCGCCATGCC GGCAGAGCAG ATTCCGCCTC TGTTGCAAAG GCCTGCAGAG GCGGTGTTGG TGCAGTAA
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Protein sequence | MMAAGWSMVA GDPAAPGEAL DEDLKRVAME AAPDGILLVD RSGRILLANP AMQAMSGYGA AELLGHSLQM LLPAEAQAAH GPQLQSYFAQ PARRPMGQGR DLWLLRKDGK RLSVDIALGH SPHGSGVAVA FVRDLSQLRQ MEACMHYHAT HDTLTGLLNR WQFGLQVEQA ISQAQAQSES GAGPASFALL LLDLDNFKAI NDGYGHDVGD QVLKEVARRL QAALGGSATL ARMGGDEFTA LLQPCNEPDL RQRIDALLHE LCRPCTIGHY ALNFGASVGA AFYPQDAGDA ATLMRYADMA MYDAKQRSRS SYARYASAMG EAMAEKVLLH ERLKRALDRG LLSLHFQPQV QVLGGQVQGV EALLRWNDEQ MGWVSPERFV PVAESTGLIL ALGEWVIDAA CRQAGDWLRA GMPLRVAVNL SAQQLRQADL QQRLMASLAR HGVPPHLLEL EVTESAAMTD PLQARELLGS LLAAGVCVVL DDFGTGYSSL AHLRDLPVSR VKIDRTFIGP MLDSPADAKI VKAVIALART LGLQVVAEGV ETAEQLRLLR ILDCDAYQGW LFARAMPAEQ IPPLLQRPAE AVLVQ
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