Gene Daci_1627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1627 
Symbol 
ID5747184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1823020 
End bp1823781 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content66% 
IMG OID641296708 
ProductHNH endonuclease 
Protein accessionYP_001562656 
Protein GI160897074 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.543288 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATGGA GTGAGAGCAG CACAGCAAAG AAGCGGTTGC GCGGACGGGC ACTGCAGCAG 
CGCCGCGAGC AGTACCGGCG ATTCCAGCCG CTGTGCGTGG CGTGCCAGGC CAGGGGCTTC
GTACGCGAAT GGGATCAGCT GGACCACATC GTGCCGCTGC ACAAGGGCGG CTCAGACGAC
TGGAGCAATC TGCAGGGACT GTGCATCCCC TGCCACAAGG AGAAGACAGA GCGGGAGCTG
AGCATGCTGC AGCCCTCGTT CTACCCGACC TGGCTGAAGC CAGCGGCATG CCACCTGACC
ATGGTCATCG GGCCGCCGGG CTCTGGCAAG ACCACGTATG CCCAGCAGCA CATGCAGCCC
GGCGACCGGC TCATCGACCT TGACCTGCTG ATGTGCGAGG TGTCGGGCCT GCCGATCTAC
CAGGTGCCAC CGAACCACCT TGCTGCCGCC GCCCGCCTGC GCAACCGCAG GCTCGGCGCG
CTGTCCAGGC CAGGCCACCC GCCCGCCTGG TTCATCACAA CAGCCATAGG CGATGACCGC
GCATGGTGGG AGACGAAGCT GGAGCCAGCC CGTGTCGTCG TGATGGAGAC GAGCGAGGCC
ACATGCATTT CACGCATCCA CGCGGATGCA AGGCGCCCAG AGCCCGCCAA GCGCGCGGCT
CTGGGGATTG TGGGCGACTG GTTTGCAGCA GCTGCAGGCC GGGCCACGAA GAGCGGGAGA
CGGCGGACCA TCGGGCTCGA CGGCTTCCCC ATTGAAGACT GA
 
Protein sequence
MGWSESSTAK KRLRGRALQQ RREQYRRFQP LCVACQARGF VREWDQLDHI VPLHKGGSDD 
WSNLQGLCIP CHKEKTEREL SMLQPSFYPT WLKPAACHLT MVIGPPGSGK TTYAQQHMQP
GDRLIDLDLL MCEVSGLPIY QVPPNHLAAA ARLRNRRLGA LSRPGHPPAW FITTAIGDDR
AWWETKLEPA RVVVMETSEA TCISRIHADA RRPEPAKRAA LGIVGDWFAA AAGRATKSGR
RRTIGLDGFP IED