Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_1453 |
Symbol | dapF |
ID | 5747009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 1626838 |
End bp | 1627698 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641296533 |
Product | diaminopimelate epimerase |
Protein accession | YP_001562482 |
Protein GI | 160896900 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGATCC GCTTTACCAA GATGCAGGGC GCTGGCAACG ATTTCGTGGT TCTCGACGAA ACCGCCGGCC CGCTGGGCCT GAGCGCAGCC CAGTACCGCT TCCTCGCCCA TCGCCAATTC GGCGTGGGCG CCGACCAGAT CCTCACGGTG CGGCCCTCGC CCGCCGAAGG CATCGATTTC GAATATGTGA TCCACAACGC CGACGGCGGC GAGGTCGAGC AGTGCGGCAA CGGCGCGCGC TGCTTTGCGC GCTATGTGCA CGACAAGGGC CTGACCGGCA AGTCCGTCAT CCGCGTGCAG ACGCTGGCCG GCCTCATCGC CCCCGAGCTG CATGCCGATG GCCGCGTCAC CGTGGACATG GGCCAGCCCG TGCTGGAGCC CTCCCTGGTG CCCTTCAATG GTGCAGACCT TGTGCCCCGC CCGCTGGGTG CGGCGCAGCA ATGGCCCCTG CAGCTGGGCG ACGAGGCCAC GGTCTGGATC GCCCCCGTTT CCATGGGCAA CCCGCATGCG GTGCAACTGG TGGACGATGT GGACCACGCC CCCGTGGCCA CCTGGGGCCC GCTGATCGAG CGCCATGTGC GCTTTCCCCA GCGCGTCAAT GCGGGATTCA TGCAGATCGT CGATCGCGGC CAGATCCGGC TGCGTGTTTA CGAGCGCGGT GCCGGCGAGA CGCTGGCCTG CGGCACGGGC GCCTGCGCGG CCGTGGTGGC CGGCATTCGC TGGGGGCTGC TCGACGCGCG CGTCGATGTG CACACCCGCG GCGGCCGGCT GACCATCGAG TGGGACGGCG GCGCGGTGCG CATGACCGGC CCCGCAGAGT TTGTTTTTGA AGGACAGATC GAGGTTCCCG ACCAGCCATG A
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Protein sequence | MQIRFTKMQG AGNDFVVLDE TAGPLGLSAA QYRFLAHRQF GVGADQILTV RPSPAEGIDF EYVIHNADGG EVEQCGNGAR CFARYVHDKG LTGKSVIRVQ TLAGLIAPEL HADGRVTVDM GQPVLEPSLV PFNGADLVPR PLGAAQQWPL QLGDEATVWI APVSMGNPHA VQLVDDVDHA PVATWGPLIE RHVRFPQRVN AGFMQIVDRG QIRLRVYERG AGETLACGTG ACAAVVAGIR WGLLDARVDV HTRGGRLTIE WDGGAVRMTG PAEFVFEGQI EVPDQP
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