| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1304 |
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| Symbol | |
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| ID | 5746859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 1449057 |
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| End bp | 1449737 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641296383 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_001562333 |
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| Protein GI | 160896751 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0118464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGGGC GCGCTCCATC TTCGGGCAGG CAAAAGGGCT TCACGCTGGT GGAGCTGCTG
GTGGTCATGG CCCTTCTGTC CCTGCTCATG CTCGGGCTGG CGTCGGCCAT GTCCACGGTC
TCGCAGACGC AGGAGCGTGT GGATGCGCGG CTGGACCGCA TGGACCATCA ACGTGTCTCG
ATTGGTTTTC TTCGTTCAGT CCTGGGACAG GTGTCCGCCG TGCGGCGCCA GGCCGGTTTG
CGCAAGCAGG GCGAGAGCGA ATTGTTCTTC GAAGGCGGCC CGCAAGGCAT GCGCTGGCTG
GGCATCATGC CTGCGCGCTT CGGAATGGGC GGCCGCACCC ATTTCCAGCT CTCCGTCGAA
GGTGATGCCT TGGTGCTACG CTTCGCGCCC TGGCAGGGTC CCGATGTCAT GCCCGACTGG
GGGCAAAGCC AGTCCTATGT GATCGATCGC GGTGTCACGG CTTTTGCCTT GCGTTACCAG
AACGCCAAGC TGGGCGTGGC ACATTGGCAG CCGCAATGGG GCCCCGAGAA GGACAACGAA
AAGGAACTGC CATCTGCCGT GGATGTTCAA GTGCAGACTT CGGCGGGAGC TTGGCCCCTG
ACGGTCGTGG CCATGCGCGC AACGGCTTCT ACCAGCCCGG ATGCAGGCGC CAGGGCAGTC
TTCGGGGGGA GCCGCTCATG A
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| Protein sequence | MTGRAPSSGR QKGFTLVELL VVMALLSLLM LGLASAMSTV SQTQERVDAR LDRMDHQRVS
IGFLRSVLGQ VSAVRRQAGL RKQGESELFF EGGPQGMRWL GIMPARFGMG GRTHFQLSVE
GDALVLRFAP WQGPDVMPDW GQSQSYVIDR GVTAFALRYQ NAKLGVAHWQ PQWGPEKDNE
KELPSAVDVQ VQTSAGAWPL TVVAMRATAS TSPDAGARAV FGGSRS
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