| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1299 |
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| Symbol | |
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| ID | 5746854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 1444741 |
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| End bp | 1446468 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641296378 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001562328 |
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| Protein GI | 160896746 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0445374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCCA CCAATCACGT CATGGAACCG ATTGCCGGTG TCGAAGCCCC GATCAAGGGG
CGGCTGGGCG AACGCCTGCT TTCCGCCGGC AAGCTGAACG AGCGCGATCT GCAAAACGCC
CTGCAGGCGC AGCAGGAATT GGGCGGCTAC CTGGGCCAGG TGCTGGTCCA GCTGGGCGTG
GTGGCGGAAA CCGACGTGGC CCAGGCGCTG TCCGAACAGC TGCACATGCG CTGGCTGCGC
GCGGAAGAGT TTCCCGACCT GCTGCCCGAT GTGCCGGGCC TGCTGGCCAG CTTTCTGGAT
GCGCAGTGCG TCTGCCCCAT TTCGCTGCAG GACGGCGTGC TCGAAGTGGC CATGTCCGTG
CCGCAGGACC CCTTCATCAC CAAGGCGCTG CGCCTTGCCA CCGGGTTGCA GATCAAGCCC
GTGCTGGCGT TGGAAGCCGA TATCCGCAAG GCCCTGTCCG AAGCCGGCCA GGAACCCGAA
GGCGAAGAAG GCCAGGACTG GGAGTCGGAC GCCACGGGTG GCGACTTCGT CGAGCATCTG
AAGGACCTGG CCAGCGAGGC GCCGGTCATC CGCCTGGTCA CGGGCATCAT TTCCCGCGCC
ATCGAGCTGC ACGCCTCCGA CATCCATCTT GAGCCCTTCG AGGCCGGCCT GCAGGTGCGC
TACCGCATGG ACGGCGTGAT CCATGCGGCC GAACTCGTGC CGCCCCGGCT GAGCGCGGCC
GTGGGCTCGC GCGTCAAGCT GCTGGCCCAT CTGGACATTG CCGAGCGGCG CCTGCCGCAG
GACGGCCGCA TCAAGACCCG CGCCAAGGGC CGCGAACTGG ACCTGCGTGT CTCCACCGCG
CCCACGGTGC ATGGCGAGAG CATCGTCATG CGGGTGCTGG ACCGCGCCAA CGTGCGCCTG
CGCCTGGAAA GCATGGGCTT CGAGGTCGAT ACGCTGGAGC GCTTCAACAC CTTGCTGGCC
AAGCCGCACG GCATCGTTCT GGTCACTGGG CCCACGGGCT CGGGCAAGAC CACCACGCTG
TACGCGGCCC TGTCCAAGAT CGACGCGGTT TCCAACAAGA TCATCACCGT CGAGGACCCG
GTCGAGTACC AGCTCGACGG CATCAACCAG ATCCAGGTCC ATCCGCAGAT CGACCTCACC
TTTGCCAACG CCCTGCGCTC CATCCTGCGC CAGGACCCGG ACATCATCAT GATCGGCGAA
ATGCGTGACG GAGAAACCGC GCAGATCGCC GTGCAGTCCG CGCTGACAGG CCACCTGGTG
CTGTCCACGC TGCACACCAA CACGGCCGCA GGCGCCGTCA CCCGCATGCG CGACATGGGG
GTGGAGAGCT ACCTGATCAC GTCCTCGGTC AACGGCGTGC TGGCCCAGCG CCTGGTGCGC
ACGCTGTGCT CGCACTGCAA GCAGCCCGAC ACGCTGCCGG CCGCCGCCGT CGAGGGCAGC
GGCCTCAAGC GTTTTTTGCG CGAGGGCTCG CCCATCTACC GCGCCGTCGG CTGCGAGCAT
TGCCGGGGCA CGGGCTACAA GGGCCGTACC GGCATCCATG AACTCATGGT CATCGACGAG
CCGCTGCGCC GCGCCATCAT CGAAGGCCAG GACGCCAACG CCCTGCATGC CATGGCGGCC
AAGAGCGGCA TGCTGAGCCT CTACGACGAC GGCCTGCGCA AGGTGGCCTC GGGCGCCACC
ACGCTGGACG AAGTGCTGCG CGTGACCCAG GACCAGAGCG ATGCCTGA
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| Protein sequence | MSSTNHVMEP IAGVEAPIKG RLGERLLSAG KLNERDLQNA LQAQQELGGY LGQVLVQLGV
VAETDVAQAL SEQLHMRWLR AEEFPDLLPD VPGLLASFLD AQCVCPISLQ DGVLEVAMSV
PQDPFITKAL RLATGLQIKP VLALEADIRK ALSEAGQEPE GEEGQDWESD ATGGDFVEHL
KDLASEAPVI RLVTGIISRA IELHASDIHL EPFEAGLQVR YRMDGVIHAA ELVPPRLSAA
VGSRVKLLAH LDIAERRLPQ DGRIKTRAKG RELDLRVSTA PTVHGESIVM RVLDRANVRL
RLESMGFEVD TLERFNTLLA KPHGIVLVTG PTGSGKTTTL YAALSKIDAV SNKIITVEDP
VEYQLDGINQ IQVHPQIDLT FANALRSILR QDPDIIMIGE MRDGETAQIA VQSALTGHLV
LSTLHTNTAA GAVTRMRDMG VESYLITSSV NGVLAQRLVR TLCSHCKQPD TLPAAAVEGS
GLKRFLREGS PIYRAVGCEH CRGTGYKGRT GIHELMVIDE PLRRAIIEGQ DANALHAMAA
KSGMLSLYDD GLRKVASGAT TLDEVLRVTQ DQSDA
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