| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1159 |
|---|
| Symbol | |
|---|
| ID | 5746714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 1288328 |
|---|
| End bp | 1290265 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641296239 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001562189 |
|---|
| Protein GI | 160896607 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCA CGTTCCCGCA CCTGCTGCTC CAGCATGCCG CCCAGCGCCC CCAGGCGCCG
GCGCTGCGCG AGAAGGAATA CGGCATCTGG CAGACCTGGA GCTGGAGCGA GGCCGCCGAG
ACCGTGCGCC ACATGGCCTG CGGCCTGGCG GCGCTGGGCC TGGCACGCGG CCAGAATCTG
GCCTTCATCA GCGACAACCG GCCCCATGTC TACATGGGCT TCATTGCCGT GCAGGCGCTG
GGCGGCGTAC CGATCCCGCT GTACCAGGAT GCCGTGGCCG CCGAGATGCG CTTCGTCATC
GAGGATGCCG AGATCGACTT CGCCTTTGCC GAGAACCAGG AGCAGGTCGA CAAGCTGCTG
GAGGTGCGCG AGAGCGTCTC CGGCCTCGGC CACATCATCT ATGACGACCC GCGCGGCCTG
CGCCACTACG ACCAGCCGGG GCTGATCAGC ACCGAGGCGC TGCTGCAAAA GGGCCAGGAG
TGGGATGCCG CACACCCGGG CGCCTGGGAT GCGATGCTGG CCGCGCTGTC GCCCGACGAT
GTCTCGGTCA TCCTCTACAC CTCGGGCACG ACCGGCAAGC CCAAGGGCGT GTGCCAGACG
CACCGCAGCT TTGGCGAGTC GGCACGCGGC GGCGTGCAGG TGGACCGCCT GGGCCCCGGC
GACAACGTGA TCTCCTACCT GCCCCCGGCC TGGGTGGGCG ACCACCTGTT TTCCTTCGCG
CAGTGGCTGG TGGCGGGCTT CACCATCAAC TGCCCGGAGT CGGCCTCGAC CGTGTCCATC
GACCTGCGCG AGATCGGCCC CAGCTACTAC TTCGCACCGC CGCGCATCTT CGAAGGCATG
CTGACCTCGG TGTCCATCCG CATGGAGGAT GCCGCGCCCT TCAAGCAATG GATGTACGGC
CGCGCCATGG CCGTGGCGCG CCGCGTGGGC TCGGACATCC TGGACGGCAA GACGGTGGGC
ACGCTGGACC GCCTGAAGTA CGCGCTGGGC GACCTGTGCA TCTACGGCCC GCTGCGCAAC
GCCATGGGCC TGTCGCGCAT CCGCGTGGCC TATACGGCGG GTGCGGCCAT CGGGCCCGAG
CTGTTCCGCT TCTTCCGCTC CATCGGCATC AACCTCAAGC AGCTCTACGG CCAGACCGAG
ACCTGCGCCT ATGTGTGCAT ACAGCGCGAC GGGCAGGTGG AGCTGAGCAG CGTGGGCCAG
GCCGCACCGG GCATCGAGCT GAAGATCGCC GACAACGGCG AGGTGCTGCT CAAGGGCGTG
TCCGTGCTCA AGGAGTACTA CAAGCGCCCC GACGCCACGG CCGAGGTGGT GGATGCCGAC
GGCTGGTTCC ACACGGGCGA TGCCGGCGTG ATCGATGCCA GCGGCCAGCT GCGCATCATC
GACCGCGCCA AGGACGTGGG CAAGACCAGC CGGGGCGCCA TGTTCGCGCC CAACTACATC
GAGAACAAGC TCAAGTTCTT CCCACAGATC AAGGAGGCGG TGTGCTTCGG CCACGGCCGC
GACCAGGTCT GCGCCTTCAT CAACATCGAC TACGAGGCCG TGGGCAACTG GGCCGAGCGC
CAGGGCCTGC CCTATGGCGG CTATGTGGAC CTGGCATCGA AGGCCAAGGT GCTGGAGATG
GTGGCCGACT GCGTGGCCCA GGTGAACGCC GACCTGGCCG CCGAAGCCGG CATGGCCGAC
ACGCAGGTGG CGCGCTTCCT GGTGCTGCAC AAGGAGCTGG ACCCCGACGA CGACGAGCTG
ACCCGCACGC GCAAGGTGCG CCGCGGCTTC ATTGCCGACA AGTACGGCGT GCTGGTCGAT
GCGCTGTACA CGGGCAAGCG TGAGCAGTTC ATCGAGACCC AGGTCAAGTT CGAGGACGGC
CGCACCGGCA GCGTCAGCGC CACGCTGTCC ATCATCGATG CCAAAACCCA TTCGGTGGCC
GCCACCGCCA GGGCCTGA
|
|---|
| Protein sequence | MTTTFPHLLL QHAAQRPQAP ALREKEYGIW QTWSWSEAAE TVRHMACGLA ALGLARGQNL
AFISDNRPHV YMGFIAVQAL GGVPIPLYQD AVAAEMRFVI EDAEIDFAFA ENQEQVDKLL
EVRESVSGLG HIIYDDPRGL RHYDQPGLIS TEALLQKGQE WDAAHPGAWD AMLAALSPDD
VSVILYTSGT TGKPKGVCQT HRSFGESARG GVQVDRLGPG DNVISYLPPA WVGDHLFSFA
QWLVAGFTIN CPESASTVSI DLREIGPSYY FAPPRIFEGM LTSVSIRMED AAPFKQWMYG
RAMAVARRVG SDILDGKTVG TLDRLKYALG DLCIYGPLRN AMGLSRIRVA YTAGAAIGPE
LFRFFRSIGI NLKQLYGQTE TCAYVCIQRD GQVELSSVGQ AAPGIELKIA DNGEVLLKGV
SVLKEYYKRP DATAEVVDAD GWFHTGDAGV IDASGQLRII DRAKDVGKTS RGAMFAPNYI
ENKLKFFPQI KEAVCFGHGR DQVCAFINID YEAVGNWAER QGLPYGGYVD LASKAKVLEM
VADCVAQVNA DLAAEAGMAD TQVARFLVLH KELDPDDDEL TRTRKVRRGF IADKYGVLVD
ALYTGKREQF IETQVKFEDG RTGSVSATLS IIDAKTHSVA ATARA
|
|---|
| |