| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1100 |
|---|
| Symbol | |
|---|
| ID | 5746655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 1218214 |
|---|
| End bp | 1219974 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641296180 |
|---|
| Product | putative sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001562130 |
|---|
| Protein GI | 160896548 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACAC CACGGGGACA GACCCGTGGC CTGCGCGCCG CTAGAGTGCG TTCACCCCAG
CCACTGCCCG CCATGCCCAT GCCCAGCTCC CCCGACCACC GATTCGGCGT TCTCGTCTGG
CGGCGCGACT CGCCCGAGCC CGTGGCGCGG CTGGGCCTGG CGCAGGAGCC GCTGCTGCAT
GCAGCCGTCA CCGAGGCCCT GGCCCGCGCG CACGGCGACG GGCACAACCC CATCGGCCAT
GGCCAGTTGC TGCACGTGGA AACACCGGGC CCGCGCGGCA CGGTGGCCCG CCATGTGGCC
GTGGTGCTGG CCGATGCCGA GGGCGAGGTC GCCCTGCTGC GCCCGGCCGA CGAGGCGGCG
GCGCTGTTCG ACATGGTGGC CAGCGTGCCC TTCGCCTTCG CCATCCTCAA CATGTTCCTG
ACCAACCCGT ACCAGGCGAT CACGGTGGCC GACCATGAAG GGCTGATGCG CTACATCAGC
CCCGTGCACG AGAAGTTCTT CGGCCTGGCG CCCGGCACGG CCGCAGGCCG GCGCGCCGAG
GACGTGATCC CCAACTCGCG CCTGCCCCAC GTGGTGCGCA GCGGCCGGGC CGAGATCGGC
GACCTGCAGC AGCTGGGGCC GGGCGTGAGC CGCATCGTCA ACCGCATGCC GGTCTACGAG
GGCGGCGCCG TGGTGGGTGC CGTGGGCCAG GTCAGCTTCA GCGGCGTGGA GGCACTCAAC
CGCATGCAGC AGCGGCTGAA CCAGCTGCAT GACGAGGTGC AGCACTACAA GCGCGAACTG
AGCCAGTTGC GCGGCGGCGC ACCTACGGCA CAGATGGTGG GCGCCAGCGC CCCCATGCAA
AGGCTGGCCC GCGAGATCGA CGCCGTGGCG CGGCTCGATG TGCCCGTGCT CATCCTGGGC
GAAAGCGGCA GCGGCAAGGA ACTGGTGGCC CAGGCCCTGC ATGCGCGCGG GCGCGAAGCC
GAAGCGCCCC TGGTCAGCCT CAACCTCGCG GCCCTGCCGG CCACGCTGAT CGAGTCCGAG
CTGTTCGGCT ACGAGGCCGG CGCCTTCACG GGCGGGCGCA GGCAGGGCCA GCCCGGCAAG
CTGGAGCAGG CCGAGGGCGG CACGCTCTTC CTCGACGAAG TGGCCGACAT TCCCATGGAG
ATCCAGGTCA AGCTGCTGCG CGTGCTGGAG GACCGCCAGG TGCAGCGCCT GGGCGCGCAC
AGCGGCCGGC AGGTGAACTT CCGCATCGTG GCCGCCACGC ACCGCGACCT GCGCGGCCTC
ATCGACAGCG GCCGCTTCCG GCTGGACCTG TTCTACCGCC TCAGCGGCGT GGTGCTGCAT
GTGCCCGCCC TGCGCCAGCG CCTGGAGGAC ATCCCGGCCC TGGTGCAGCG CTTTGCCCAG
TCGTTCTGCG AGCGCAACGG CATTGCGCTG CCGCGCATCG CTCCCGGTGT CATGCCCTAC
CTGGCCCGCC AGGCCTGGCC CGGCAATGTG CGCCAGCTGC GACAGCGCGT GGAAGAGGCC
CTGGTGTTCT GCGACGGCCA CCTGCTGGGC GTGGACAACT TCGCGCGCCA CGAGGACCCG
CTGGCCGGCG CACGACCTTT GCCCGCCGCC GAGCCCGGCA TGCCCTCCAC CGGCGCCGTG
GCCCCGCTCA AGGACCAGGA GCGCAACGCC ATCCTCGACG CCATCGCACG CTGCGGCGGC
AACAAGAAGC TGGCCGCGCA GGAGCTGGGC ATCTCGCGCT CCTATTTGTA CAAGGTGCTG
GGCGCGGCAA GCCAGGGCTG A
|
|---|
| Protein sequence | METPRGQTRG LRAARVRSPQ PLPAMPMPSS PDHRFGVLVW RRDSPEPVAR LGLAQEPLLH
AAVTEALARA HGDGHNPIGH GQLLHVETPG PRGTVARHVA VVLADAEGEV ALLRPADEAA
ALFDMVASVP FAFAILNMFL TNPYQAITVA DHEGLMRYIS PVHEKFFGLA PGTAAGRRAE
DVIPNSRLPH VVRSGRAEIG DLQQLGPGVS RIVNRMPVYE GGAVVGAVGQ VSFSGVEALN
RMQQRLNQLH DEVQHYKREL SQLRGGAPTA QMVGASAPMQ RLAREIDAVA RLDVPVLILG
ESGSGKELVA QALHARGREA EAPLVSLNLA ALPATLIESE LFGYEAGAFT GGRRQGQPGK
LEQAEGGTLF LDEVADIPME IQVKLLRVLE DRQVQRLGAH SGRQVNFRIV AATHRDLRGL
IDSGRFRLDL FYRLSGVVLH VPALRQRLED IPALVQRFAQ SFCERNGIAL PRIAPGVMPY
LARQAWPGNV RQLRQRVEEA LVFCDGHLLG VDNFARHEDP LAGARPLPAA EPGMPSTGAV
APLKDQERNA ILDAIARCGG NKKLAAQELG ISRSYLYKVL GAASQG
|
|---|
| |