Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_1068 |
Symbol | |
ID | 5746623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 1178270 |
End bp | 1179313 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641296148 |
Product | twitching motility protein |
Protein accession | YP_001562098 |
Protein GI | 160896516 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.365161 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACATCA CCCAATTGCT GGCATTCAGC GTCAAGAACA AGGCCTCCGA CCTGCACCTG TCCGCGGGGC TGCCGCCGAT GATCCGTGTG CACGGCGATG TGCGCCGCAT CAATGTCGAT CCGCTGGACC ACAAGACGGT CCACGCCATG GTCTACGACA TCATGAGCGA CTCCCAGCGC AAGGCCTACG AGGAGTTCCT GGAGGTGGAC TTCTCGTTCG AGATCGAGGG GCTGGCGCGC TTTCGTGTCA ACGCCTTCAA CCAGTACCGG GGCGCGGCCG CCGTCTTCCG GACCATTCCC AGCAAGATCC TGACGCTGGA GCAGCTCAAC GCGCCACGCA TCTTCGGCGA CCTGGCCCTG AAGCCGCGCG GCCTGGTGCT GGTGACCGGC CCCACGGGCT CGGGCAAGTC CACCACGCTG GCCGGCATGG TCAACCACCT CAACGAGACC GAGTACGGGC ACATCCTGAC GGTGGAGGAC CCCATCGAAT TCGTGCACGA CTCCAAGAAG TGCCTGATCA ACCAGCGTGA AGTCGGGCCG ATGACGCAGT CGTTCTCGGC CGCCCTGCGC TCGGCGCTGC GCGAGGACCC GGACGCCATC CTGGTGGGCG AAATGCGTGA CCTGGAAACC ATCCGCCTGG CCATGACCGC GGCCGAGACG GGCCACCTGG TCTTCGGCAC CCTGCACACC TCCAGCGCCG CCAAGACCAT CGACCGCATC ATCGACGTCT TCCCCGCCGA GGAAAAGGAG ATGGTGCGCG CCATGCTCTC CGAATCGCTG CAGGCCGTGA TCTCGCAGAC GCTGTGCAAG ACCAAGGACG GCCAGGGCCG CATCGCGGCC CACGAAATCA TGCTGGGCAC CAGCGCCATC CGCAACCTGA TACGCGAGGC CAAGGTGGCC CAGATGTACT CCACCATCCA GACGAGTCAG AATGTGGGCA TGCAGACGCT GGACCAGAAC CTGACCGATC TGGTGCGGCG CAACCTGATC AGCCCCGCGG AAGCCCGCGC CAAGGCCAAG ATACCGGACA ACTTCCCGGG CTGA
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Protein sequence | MDITQLLAFS VKNKASDLHL SAGLPPMIRV HGDVRRINVD PLDHKTVHAM VYDIMSDSQR KAYEEFLEVD FSFEIEGLAR FRVNAFNQYR GAAAVFRTIP SKILTLEQLN APRIFGDLAL KPRGLVLVTG PTGSGKSTTL AGMVNHLNET EYGHILTVED PIEFVHDSKK CLINQREVGP MTQSFSAALR SALREDPDAI LVGEMRDLET IRLAMTAAET GHLVFGTLHT SSAAKTIDRI IDVFPAEEKE MVRAMLSESL QAVISQTLCK TKDGQGRIAA HEIMLGTSAI RNLIREAKVA QMYSTIQTSQ NVGMQTLDQN LTDLVRRNLI SPAEARAKAK IPDNFPG
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