| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1046 |
|---|
| Symbol | rpsD |
|---|
| ID | 5746600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 1156890 |
|---|
| End bp | 1157513 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641296125 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001562076 |
|---|
| Protein GI | 160896494 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACGCT ATATCGGCCC CAAGGCCAAA CTCTCCCGCC GTGAAGGCAC TGACCTGTTC
CTGAAGAGCG CACGTCGCTC GATCGCCGAC AAGTCCAAGT TCGACACCAA GCCCGGCCAG
CACGGCCGCA CTTCCGGTCA GCGTACTTCC GACTTCGGCC TGCAGCTGCG TGAAAAGCAG
AAGGTCAAGC GCATGTACGG CGTGCTGGAA AAGCAATTCC GCCGCTACTT CGAAGCCGCC
GACAAGAAGA AGGGCAACAC CGGTGCCAAT CTGCTGTCGC TGCTGGAGTC GCGTCTGGAC
AACGTGGTGT ACCGCATGGG CTTCGGCTCG ACCCGCTCGG AAGCGCGTCA GCTGGTGTCG
CACAAGGCCA TCACGGTCAA CGGCCAATCC GTCAACATCC CTTCCTACAT GGTGAAGGTG
GGTGACGTGG TCGCCGTGCG TGAAAAGTCC AAGAAGCAGG CTCGTATCGT CGAAGCCCTG
CAACTGGCTG GTCAAGTCGG TTTCCCCGCA TGGGTGGAAG TGTCTGCCGA CAAGGCTGAA
GGCACGTTCA AGAAGTCGCC TGACCGCGAC GAGTTCGGTG CAGACATCAA CGAATCCCTG
ATCGTTGAGT TGTACTCGCG TTAA
|
|---|
| Protein sequence | MARYIGPKAK LSRREGTDLF LKSARRSIAD KSKFDTKPGQ HGRTSGQRTS DFGLQLREKQ
KVKRMYGVLE KQFRRYFEAA DKKKGNTGAN LLSLLESRLD NVVYRMGFGS TRSEARQLVS
HKAITVNGQS VNIPSYMVKV GDVVAVREKS KKQARIVEAL QLAGQVGFPA WVEVSADKAE
GTFKKSPDRD EFGADINESL IVELYSR
|
|---|
| |